RNA id: TU78090


Basic Information

Item Value
RNA id TU78090
length 1115
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G65934
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17431077 ~ 17440372 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGATTGGATaactgtatgaatgtacaggtgttcctaataaagtggatggtaagTGTATATGCTTCAGATATGTTGTTCTTATGTTGTAGAGAATTTAAAGTCAATCAGTAAACTGGAACTTCTGTAAGGCAAGTGACCACCaagaaaagatagaaagataTATTAGGAACTACAGAAATGCTTATTCTTGTAAGTAACCAAGTGATACAAATAAGATACTAGATTGTTAACTGTTTAAtacatgaaattaaattcaCACAGACAATGGTCGTTTCTACTTTCTGTTGTGTTTacgtatatataaatattattcaaatgtgATACTATTGTATGCGATTTTTAATTCAACCAAACAGTAGCACATTTTTTCAACCAAACAGTAgcacattttttattcttaaaaatttAAAAGCTTTTGGGCTACAGTAAACATCATGACAAAATGTGTAGAAGGCAGTAAGGCACAATGTTAACCATAACAATCCTTCTTCCATAAATATCAATCCCACACTGAggctttttttgttaaagatcTAAACCTGAGAATGTTTTACAAAGAGAAAAGGCACAATgaaaatgcaacattttggcTCTGATTACAACTAAAATACCAACAGCAGTTTCCTTCTGTAATATCAAAACATTGGTGATCAAGGAAATTCAGCAAGATATGAAGATCAGTTTCACAGAGTCTGATTTCTCCGCCCACCAGATCATGCTAACGCACAAGATATTCGTTGCGCTTATTCAGTCGGACCTGAATGAAAGACACAAATCCAATCACTACATAGATTCCTGCTGCGATGAAGCAGTTGTAGCCAACTTGGTTGTAGACAGCATAAACATTCTGCAGTGGGTTCTGACTGTAAAGAAAAGACCAAAGCACCTGTTTAATATTTCAATAGTTCAAGTCATTTATAAATTAGACAAGAAATATCACTTTTAGAAATAACATCCAGCTAATAAAACCATGTGTCGCACATCTTGGGTGCCATAGTCATGGTTATGAAAGTGGGGCCCAGGGAACCCCAGAGGTATGTTTCTGTAGAAATCAAAATGTTAATGCAGTGCTTCTGTGGGTGGaatgttcagaaataaaataaaactttcacag

Function

GO:

id name namespace
GO:0061371 determination of heart left/right asymmetry biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78075 lncRNA upstream 27198 17402559 ~ 17403879 (+) True G65927
TU78076 lncRNA upstream 27222 17402559 ~ 17403855 (+) False G65927
TU78081 lncRNA upstream 38279 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA upstream 58938 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA upstream 71508 17358486 ~ 17359569 (+) True G65939
XR_004577991.1 lncRNA downstream 13074 17453446 ~ 17484922 (+) False LOC117597048
XR_004577992.1 lncRNA downstream 17373 17457745 ~ 17484922 (+) True LOC117597048
TU78323 lncRNA downstream 136732 17577104 ~ 17578946 (+) True G66124
TU78331 lncRNA downstream 153260 17593632 ~ 17634867 (+) False G66128
TU78335 lncRNA downstream 153260 17593632 ~ 17634867 (+) False G66128
XM_026936020.2 mRNA upstream 11775 17405353 ~ 17419302 (+) True pelp1
XM_026936053.2 mRNA upstream 29689 17351919 ~ 17401388 (+) False arrb2b
XM_026936024.2 mRNA upstream 101531 17308622 ~ 17329546 (+) False mtmr1a
XM_026936030.2 mRNA downstream 47051 17487423 ~ 17500896 (+) True alox12
XM_034303569.1 mRNA downstream 68053 17508425 ~ 17520166 (+) False si:dkey-6n21.12
XM_026936070.2 mRNA downstream 73140 17513512 ~ 17520166 (+) True si:dkey-6n21.12
XM_026936048.2 mRNA downstream 79904 17520276 ~ 17523339 (+) True si:dkey-6n21.13
XM_034303563.1 mRNA downstream 133218 17573590 ~ 17586296 (+) True LOC113539911
XR_003404112.1 other upstream 669202 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 669430 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 669739 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 669970 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 670258 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 169332 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 324089 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 559786 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 673072 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 756940 18197312 ~ 18208564 (+) True G66492

Expression Profile