RNA id: TU80840


Basic Information

Item Value
RNA id TU80840
length 595
lncRNA type intronic
GC content 0.37
exon number 2
gene id G68186
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20803417 ~ 20804104 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTGCAGTGTACAGTCATCGCTGATCACAGTTTAGGAGAATACAGTGTGTACTGGTTCAGACATAACTCAGGACAATCTCATCCAGGAATCATTTACGCTCATGGAGACAGCAAAGATTGGTGTAAGAAGAACCCTaaagctgaaaaacagaagtgtgtttACAGTCTGCCCAAGAAGAACCTCAGTTCCTCTGATGCTGGAACTTATTACTGTGCTGTAGCTGCATGTGGACAGATACTGTTTGGGAATGGAACTAAGCTGGATATAAACATTACAGGTCGGGATTGCTCTGAGCACATGCACACCTTGGTGCTTTTTTCTATCGTAAGAACTGCTGTTCTTTCGTGTTGTTTTCTCATAATTATGATATACTTTTGTAGCCGCAAAAAAGCAAAGTCTTCCGTTAGAAAGACTACCAAGAAAAAAAGCTATCCTGCcagaatagaaaaatagaatatCTGCAGATTAATTGCTtagtggaatttttttaaaactaaaatttaaaGCACTAAATCAGTTTATAATAATATGTTCTGTGTTCATGTGCATTTGGTGTTGTCAATACAATGTCAACAAAACTGATCAGAATAAAA

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0002252 immune effector process biological_process
GO:0002253 activation of immune response biological_process
GO:0072376 protein activation cascade biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80746 lncRNA downstream 167218 20635904 ~ 20636199 (-) True G68108
TU80745 lncRNA downstream 167624 20635532 ~ 20635793 (-) True G68107
TU80738 lncRNA downstream 171707 20630166 ~ 20631710 (-) True G68106
TU80707 lncRNA downstream 232487 20570399 ~ 20570930 (-) True G68080
TU80702 lncRNA downstream 236659 20559378 ~ 20566758 (-) True G68075
TU81181 lncRNA upstream 500660 21304764 ~ 21313873 (-) False chchd7
TU81229 lncRNA upstream 516714 21320818 ~ 21321146 (-) True G68466
TU81220 lncRNA upstream 521972 21326076 ~ 21329250 (-) True G68462
TU81222 lncRNA upstream 521972 21326076 ~ 21329250 (-) False G68462
TU81263 lncRNA upstream 603007 21407111 ~ 21408207 (-) True G68495
XM_026936122.2 mRNA downstream 34991 20755876 ~ 20768426 (-) True sstr1b
XM_026935869.2 mRNA downstream 126273 20661726 ~ 20677144 (-) True peli3
XM_034303290.1 mRNA downstream 128014 20661726 ~ 20675403 (-) False peli3
XM_026937254.2 mRNA downstream 299009 20497680 ~ 20504408 (-) True ecsit
XM_026936378.2 mRNA downstream 317759 20479260 ~ 20485658 (-) True si:dkey-106g10.7
XM_026935868.2 mRNA upstream 31657 20835761 ~ 20838098 (-) True LOC113539812
XM_026937001.2 mRNA upstream 91337 20895441 ~ 20899092 (-) True mad2l1
XM_034303394.1 mRNA upstream 208148 21012252 ~ 21106343 (-) False ank2b
XM_034303392.1 mRNA upstream 208148 21012252 ~ 21106343 (-) False ank2b
XM_034303393.1 mRNA upstream 208148 21012252 ~ 21106343 (-) False ank2b
XR_003404107.1 other downstream 659528 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 837579 19962616 ~ 19965838 (-) False snrpf
XR_004578057.1 other downstream 860050 19931590 ~ 19943367 (-) False LOC113539792
TU81225 other upstream 521942 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 564146 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 564146 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 564146 21368250 ~ 21371004 (-) False LOC113539989
trnaa-ugc other upstream 614064 21418168 ~ 21418239 (-) True trnaa-ugc

Expression Profile