RNA id: TU81559


Basic Information

Item Value
RNA id TU81559
length 540
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G68740
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21828273 ~ 21828833 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gTCAATAAAGCACAGCTCTGAGAATAAAAATATGGTGGTATACAGTCTATGAACATTTACATTGTCCTATATTATCTTGAACATTTTTAGGATTAAAGAAAGTACTATAAGATGTAAATAAGCAACATGTGATTTCATCACCTCATGTTTTGTGTATTACTCTACTAAATATTGAGCAGACATCTTCCTACTACCAAGCAGATTGGTGATGTACAAAATTCATCTATACAtcttgattatttaaaaaacacatttttcttttgtgtaatTAACATAGAAATTTGTTGtaacactgtgtgtgcgtgtgtgtgtgttatgcatgCTCATTTTGTTCCATGTTGGTAACCAGTCCCTTGGTGTCTACTGTAGTGGTAGATCGTGCAGGGTTGTTAAAGTAGAGTGTGTTATCAAACGTACACTCCCCGACTACTGGGATAGTTGGTCTTTTATAGAAGAGGAAGGCAGCCAGTCCTGCTACAGCAATTATCACCAATACAACTGCTACAGCGATACCAGTGTAGCCATGAGAGGCTTCTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81377 lncRNA downstream 326840 21496932 ~ 21501433 (-) True G68585
TU81365 lncRNA downstream 352497 21474587 ~ 21475776 (-) True G68577
TU81291 lncRNA downstream 355241 21472819 ~ 21473032 (-) True G68520
TU81290 lncRNA downstream 356434 21471632 ~ 21471839 (-) True G68519
TU81263 lncRNA downstream 420066 21407111 ~ 21408207 (-) True G68495
TU81560 lncRNA upstream 1243 21830076 ~ 21830642 (-) True G68741
TU81562 lncRNA upstream 6389 21835222 ~ 21835426 (-) True G68743
TU81563 lncRNA upstream 6937 21835770 ~ 21835995 (-) True G68744
XR_004578020.1 lncRNA upstream 11648 21840481 ~ 21843581 (-) True LOC117597088
TU81571 lncRNA upstream 17552 21846385 ~ 21846728 (-) True G68752
XM_026936531.2 mRNA downstream 42898 21777876 ~ 21785375 (-) True hacd1
XM_026936823.2 mRNA downstream 70546 21748835 ~ 21757727 (-) True tyms
XM_034303776.1 mRNA downstream 92515 21730619 ~ 21735758 (-) True adcyap1a
XM_026936085.2 mRNA downstream 92532 21730195 ~ 21735741 (-) False adcyap1a
XM_026936632.2 mRNA downstream 204641 21582222 ~ 21623632 (-) True smchd1
XM_026936723.2 mRNA upstream 88380 21917213 ~ 21933593 (-) False nsun6
XM_026936722.2 mRNA upstream 88380 21917213 ~ 21933342 (-) True nsun6
XM_026936724.2 mRNA upstream 88380 21917213 ~ 21932951 (-) False nsun6
XM_026936721.2 mRNA upstream 88380 21917213 ~ 21932951 (-) False nsun6
XM_026937223.2 mRNA upstream 416397 22245230 ~ 22252384 (-) True chpf2
trnaa-ugc other downstream 410034 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578106.1 other downstream 457263 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other downstream 457263 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other downstream 457269 21368250 ~ 21371004 (-) False LOC113539989
TU81225 other downstream 499023 21326046 ~ 21329250 (-) False G68462
TU81579 other upstream 105693 21934526 ~ 21935169 (-) True G68760
TU82055 other upstream 803352 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 1465118 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 1651132 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 1651219 23480052 ~ 23480566 (-) False LOC117597073

Expression Profile