RNA id: TU81734


Basic Information

Item Value
RNA id TU81734
length 1316
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G68907
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22170080 ~ 22173974 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTGGGTCTCTTTGTTCTTGGGCGGCTCGACACGTTTCACTGGCCCAGTCCTCCTCTCAGGACGTCCTCCTCTCCTTTGTCCTTGCTCTTGAATTTGGGGTCTCCGCCACTGGTCTTTTCCACTTGCACCTCTCCAGTTAGGCTCCTCTTTGCTTCCTCTGGCCTTGTGTTCTCTCAGTTTCTCCTCCTCTTTGTCCATGTGTggtggctctctctctctccagttccCTTGGCTGCTAGCATGTAAGGCAGGCCCTTTCTTCCTAGGGTAACCCtgccttcctcctcctctccatcctctGTTGTTCCTGTGCTCGTGCTCTACTTCAGTGGGCGCTACACTGGCTGTATAATCTACATCTGCTGCACGATTGTCCTGATTTGCTTCTTTGTGTCTGGTTAATGGCTTTCTTGAATCTTTGCCTCTTCTGGACATTCTTGGCCAGGTTTCTCTGGGTTCATGTTGGAGCTCGCCCACGTAGGCACCTTTTTGTTGATTCTCCACATCTATGAATCTGTAGGCAGGTGCGGTGTTGGATTGCTGGCAAACATTCGACACGTCATCCTGCACTGAGGGGCCATTATCACTTTCAGACCTTGACCATCTTGAACCTTGGGACCAATGCTCAGTATTACCCCTacttcctctccctcctcttcctcttcctcttcctcccctTATCTCACATCTGCTAGATGAGctgttgtgtgatgtgtgtgtagctgcGTTGTCATAGAATTCATTTTGCTCCTCTGGATGACTGGCTAGATTTGAGTGTCCTGACCTTGCATGTGCTCTATCGTGACCTCCCCGTTTTCGATTGTGGCCTGGCCGTGGATGATCTCTTCTGGACGCTGACTGGCTGGTCCTCCCTGGTACATAATCAGGATTTTTGTCCCCGAGGCTTCAGCCATtcgaaaacatttaaaaaagctttCCCTAAATATTTCTGTAGCGTCTCCTCTACCTGCTGTCAAACCAGAATGAATTTAATATCGCAGGCTAACAGTAAACAAGGCTAAAAGTCACTCGCTGGTCGCGTTTATCCAATCAGAGAAGAGGACGGAGCTCGTGGCCATTGCGTCATCAGCACTGAGGCGGGTTCAggctacagtgtgtgtagtgatccAGACTTGTGGCAGAAGATAAATATAGCAACAGATATATTaggaatgtatttaaaaaaaattgtaccaTGTGCAGCAGTCTTTTGTTCATCTCTTTTTGGAAATATTAACTGGAAAAGGGTCTGgacaataacaaataaatattttataataattatttcaacAGTTTAATTCTTGCCAATTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81577 lncRNA downstream 223843 21945612 ~ 21946237 (-) True G68758
TU81571 lncRNA downstream 323352 21846385 ~ 21846728 (-) True G68752
XR_004578020.1 lncRNA downstream 326499 21840481 ~ 21843581 (-) True LOC117597088
TU81563 lncRNA downstream 334085 21835770 ~ 21835995 (-) True G68744
TU81562 lncRNA downstream 334654 21835222 ~ 21835426 (-) True G68743
TU81751 lncRNA upstream 14209 22188183 ~ 22188763 (-) True G68923
TU81994 lncRNA upstream 205321 22379295 ~ 22379533 (-) True G69124
TU82001 lncRNA upstream 235629 22409603 ~ 22452697 (-) True G69128
TU82004 lncRNA upstream 279248 22453222 ~ 22459488 (-) True G69131
TU82012 lncRNA upstream 331816 22505790 ~ 22512310 (-) True G69139
XM_026936723.2 mRNA downstream 236487 21917213 ~ 21933593 (-) False nsun6
XM_026936722.2 mRNA downstream 236738 21917213 ~ 21933342 (-) True nsun6
XM_026936724.2 mRNA downstream 237129 21917213 ~ 21932951 (-) False nsun6
XM_026936721.2 mRNA downstream 237129 21917213 ~ 21932951 (-) False nsun6
XM_026936531.2 mRNA downstream 384705 21777876 ~ 21785375 (-) True hacd1
XM_026937223.2 mRNA upstream 71256 22245230 ~ 22252384 (-) True chpf2
XM_026937013.2 mRNA upstream 143491 22317465 ~ 22326808 (-) True garem
XM_026936957.2 mRNA upstream 164779 22338753 ~ 22345651 (-) True dph2
XM_034303790.1 mRNA upstream 164779 22338753 ~ 22345604 (-) False dph2
XM_026936140.2 mRNA upstream 171961 22345935 ~ 22354576 (-) True mcur1
TU81579 other downstream 234911 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 751841 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578106.1 other downstream 799070 21368250 ~ 21371010 (-) False LOC113539989
TU82055 other upstream 458211 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 1119977 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 1305991 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 1306078 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 1319405 23493379 ~ 23493919 (-) True G69592

Expression Profile