RNA id: TU81751


Basic Information

Item Value
RNA id TU81751
length 261
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G68923
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22188183 ~ 22188763 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGATACCTGTGGACGTAGCTGAGGATGGTTCTACACTGATACCTGTGGACATAGCTGTGGATGGTCCTACACTGATACCCGTGGACGTAGCTGTGGATGGTTCTACACTGATACCCGTGGACGTAGCTGAGGATGGTTCTACACTGATACCCGTGGACGTAGCTGAGGATGGTCCTACACTGATACCCGTGGACGTAGCTGAGGATGGTTCTACACTGATACCCGTGGACGTAGCTGAGGATGGTCCTACACTGATACC

Function

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81734 lncRNA downstream 14209 22170080 ~ 22173974 (-) True G68907
TU81577 lncRNA downstream 241946 21945612 ~ 21946237 (-) True G68758
TU81571 lncRNA downstream 341455 21846385 ~ 21846728 (-) True G68752
XR_004578020.1 lncRNA downstream 344602 21840481 ~ 21843581 (-) True LOC117597088
TU81563 lncRNA downstream 352188 21835770 ~ 21835995 (-) True G68744
TU81994 lncRNA upstream 190532 22379295 ~ 22379533 (-) True G69124
TU82001 lncRNA upstream 220840 22409603 ~ 22452697 (-) True G69128
TU82004 lncRNA upstream 264459 22453222 ~ 22459488 (-) True G69131
TU82012 lncRNA upstream 317027 22505790 ~ 22512310 (-) True G69139
TU82009 lncRNA upstream 326941 22515704 ~ 22519266 (-) True G69136
XM_026936723.2 mRNA downstream 254590 21917213 ~ 21933593 (-) False nsun6
XM_026936722.2 mRNA downstream 254841 21917213 ~ 21933342 (-) True nsun6
XM_026936724.2 mRNA downstream 255232 21917213 ~ 21932951 (-) False nsun6
XM_026936721.2 mRNA downstream 255232 21917213 ~ 21932951 (-) False nsun6
XM_026936531.2 mRNA downstream 402808 21777876 ~ 21785375 (-) True hacd1
XM_026937223.2 mRNA upstream 56467 22245230 ~ 22252384 (-) True chpf2
XM_026937013.2 mRNA upstream 128702 22317465 ~ 22326808 (-) True garem
XM_026936957.2 mRNA upstream 149990 22338753 ~ 22345651 (-) True dph2
XM_034303790.1 mRNA upstream 149990 22338753 ~ 22345604 (-) False dph2
XM_026936140.2 mRNA upstream 157172 22345935 ~ 22354576 (-) True mcur1
TU81579 other downstream 253014 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 769944 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578106.1 other downstream 817173 21368250 ~ 21371010 (-) False LOC113539989
TU82055 other upstream 443422 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 1105188 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 1291202 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 1291289 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 1304616 23493379 ~ 23493919 (-) True G69592

Expression Profile