RNA id: TU82121


Basic Information

Item Value
RNA id TU82121
length 474
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G69233
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22771386 ~ 22772012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGAATATAACACAAagaatccacacacacatcaacacaaaaAGCCCTGAGAGAATGAATACGTGCATTTTTCAGTCCTGTCAGTTCGCCATTAACCTTCTCCAACTTCTTGGCTGTTTGCTCCACAGACTTCTCAATGTCTTTCAGCTTTTTCAGTTCAGCCTCCTCCTCTGGACTATTCTAGCAAGTGAAAGTGTAAAACATACACATCTCCATTTACATCAATAAATCTCTCAAAAAACACCTCTTTCTACTTCAGGTTATATTTTTACCCTTTTCCCGATCATCATAAGTTTACATCCTTGCTTTACTCCAAGGCTGGACAGACTTTCCTCCATTTCCTTCAAGGATTTCCtttaaatattattttctggGAAGCTTGTGGTACCCCAGTGGCTTGTGCCAGAGCTTCTGACAGATCTTTAAGTGTAGGCTCATTTCCATCCTGTCCTGTTATTGTGATGTTGTGTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82087 lncRNA downstream 93468 22677376 ~ 22677918 (-) True G69203
TU82062 lncRNA downstream 118940 22649939 ~ 22652446 (-) True G69183
TU82063 lncRNA downstream 120842 22649939 ~ 22650544 (-) False G69183
TU82054 lncRNA downstream 139824 22629615 ~ 22631562 (-) True LOC113540019
TU82009 lncRNA downstream 252120 22515704 ~ 22519266 (-) True G69136
TU82140 lncRNA upstream 31374 22803386 ~ 22805908 (-) True G69248
TU82146 lncRNA upstream 36894 22808906 ~ 22809249 (-) True G69254
TU82235 lncRNA upstream 282502 23054514 ~ 23055383 (-) True G69320
XR_004578004.1 lncRNA upstream 500150 23272162 ~ 23273614 (-) True LOC117597081
TU82439 lncRNA upstream 506563 23278575 ~ 23278782 (-) True G69503
XM_034303297.1 mRNA downstream 70235 22679189 ~ 22701151 (-) False rgs20
XM_026935863.2 mRNA downstream 80468 22679189 ~ 22690918 (-) False rgs20
XM_026935862.2 mRNA downstream 80468 22679189 ~ 22690918 (-) True rgs20
XM_034303845.1 mRNA downstream 108904 22653613 ~ 22662482 (-) True LOC113540005
XM_034303443.1 mRNA downstream 135298 22631245 ~ 22636088 (-) False LOC113540019
XM_026936105.2 mRNA upstream 66015 22838027 ~ 22851158 (-) True emilin2a
XM_026935864.2 mRNA upstream 214649 22986661 ~ 22990616 (-) True adcyap1b
XM_026935865.2 mRNA upstream 214649 22986661 ~ 22990612 (-) False adcyap1b
XM_026937238.2 mRNA upstream 269096 23041108 ~ 23050113 (-) True clul1
XM_026936974.2 mRNA upstream 378114 23150126 ~ 23174379 (-) True mrc1b
TU82055 other downstream 135634 22632185 ~ 22635752 (-) False LOC113540019
TU81579 other downstream 836217 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 1353147 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578104.1 other downstream 1400376 21368250 ~ 21371010 (-) True LOC113539989
XR_004578082.1 other upstream 521939 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 707953 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 708040 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 721367 23493379 ~ 23493919 (-) True G69592
LOC117597074 other upstream 723023 23495035 ~ 23495897 (-) True LOC117597074

Expression Profile