RNA id: TU82140


Basic Information

Item Value
RNA id TU82140
length 1935
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G69248
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22803386 ~ 22805908 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgcattgcaagGCTTTATTTGTGGTCGTCACATAACAGTCTTTTGGTTTCTATCATTAAGACATATGCATGGTGACATTAGACCATCAATATGTCAGACAGATATAAACAGACAGACTATAACCTTGAAAGCCTTTTGCTTCACACAGACTGCCATAGAATTGAAGCACATCCATATAGTACTAGTGTAACGTAAAATCCAGCTACAGAGCTACAAGATATTACACTACGACAATGTGCTGGctttcttatttaataatttcCAAGAGTTTCCCTTTTAGTACTATTATGATGAATACATTTAAGCAAAAAGAGTTAATTCTCCTAGCTGAGCTGTTTCTCAAGATTACTGTATCTTCAATCATAAATGGATGACCTGTAGGTAACATTTCAgttaaaacaggaaataatatggacacaaataatacaaacagaaataaaatattaaaacagtaaaGGCACGTGCTAGATTTATGTATGAATATGGCAACGTTTAAAGCATTTCATTTCCAACTATGTTCACCTTTTCAAACGGTTTTCTCAGGAATCCAGGGTAAGCGGCTGATTAAAGCTGAGTACTGAATGTGCCATGTAAGTGTTTTAGATCTGGTGCTAATCTAGATTACCACACTGAGCATGATTGATATGTTTGCCTTTCACAAACAGttgttcattattaatgttaattgttAATGAGGTGTTAATTATTACTACTAATTGGCCAGGAGCtttaatgtgtctgtgtgtttatgacgTACGGAGGTTGCACACGCTTTGGAGTAAAATGCTGTAGGATGCACACTGGTCATATCACGGCCCCTGTGTTCTCCTGCAGCTCCCGTATTTCTCTTCTACTCTTTCTTCTCAGCATCGTCCTCTGGTATGTAGACGCTGACGGTGAACTCGCCAGCCTCTGTGCCGTACTTGTTCTTCACCAGCAGGGCGTACTTGCCTGAGTCAGTCGAACTGACTGCCGCGATGGTGATGCTGGCAAACTTGCCGTGCTCAAACTTGAGCATGATGTGATCATCAGGTAGCAGCTCTTTGTCATTCTTCAGCCAGCTGACTTCAGGCACAGGGTCGCCCCACACATTGCCGGTAAGGTTCAAAGCTTGCCCTCCTGGATAGTGACCACATCTGGCAGGCCTCCAATCACACGTGCTCGGTCTATGAGAAAAATGAAGCAGTCAGTAAGCCTCTTGGTAAATCAATGTGTACTCCGAAGGAATTTCTTACTCCTGACCCTACATGtctttatattttcaaaaacaagaagtgagGTTACAGCACAGACTGTAGGGTCTAAACATTCCCAAGACATTTAGACAGGAGATGCATCCCTTACTGCATCACTACTCTATATGCATCCTACGCAAGTTGGTAAGGAAGATAGCTTGAAATAGCATCCGCATGCTTTCAGAACAAGCTGTCTTCAGGAAAGAGCACAACAATGACAGCAGAGACAATCACTTACTTCTCTCTGCAATAGCGGCAGCCCTGAGGAAGGAAATGGATAAGCACACTGTTAGTGAAGGTTTTAAATAGCATCACAGCCTGTTAAGGTGATATGGTCTACTTCCACACAGCAGTGTCAGAAAAAGCCAGAGCCAATAACGTCATAAGGATGTACTCAgatgttattttctattttaggaCTTTAgtaggagttttttttttcttgtcgtTTGTTTGCATACAACAGTTTGTAAAAGTATACATTATTTGTGAATgatatctttaataaaatacaaaagtagGATACAGATAATTTATTATATCATAATTAAGTACTTACTTCAGCCTCTGGAACTCTGCATAGGCCTCTTCCCATGCtttaatagaatagaatagaatagaatagaatagaatagaaagtGTTGAATgagaaaggttaaaaaaaagtagactaataataaactccAGTCTAAAATTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82121 lncRNA downstream 31374 22771386 ~ 22772012 (-) True G69233
TU82087 lncRNA downstream 125468 22677376 ~ 22677918 (-) True G69203
TU82062 lncRNA downstream 150940 22649939 ~ 22652446 (-) True G69183
TU82063 lncRNA downstream 152842 22649939 ~ 22650544 (-) False G69183
TU82054 lncRNA downstream 171824 22629615 ~ 22631562 (-) True LOC113540019
TU82146 lncRNA upstream 2998 22808906 ~ 22809249 (-) True G69254
TU82235 lncRNA upstream 248606 23054514 ~ 23055383 (-) True G69320
XR_004578004.1 lncRNA upstream 466254 23272162 ~ 23273614 (-) True LOC117597081
TU82439 lncRNA upstream 472667 23278575 ~ 23278782 (-) True G69503
TU82468 lncRNA upstream 525108 23331016 ~ 23331535 (-) False retreg1
XM_034303297.1 mRNA downstream 102235 22679189 ~ 22701151 (-) False rgs20
XM_026935863.2 mRNA downstream 112468 22679189 ~ 22690918 (-) False rgs20
XM_026935862.2 mRNA downstream 112468 22679189 ~ 22690918 (-) True rgs20
XM_034303845.1 mRNA downstream 140904 22653613 ~ 22662482 (-) True LOC113540005
XM_034303443.1 mRNA downstream 167298 22631245 ~ 22636088 (-) False LOC113540019
XM_026936105.2 mRNA upstream 32119 22838027 ~ 22851158 (-) True emilin2a
XM_026935864.2 mRNA upstream 180753 22986661 ~ 22990616 (-) True adcyap1b
XM_026935865.2 mRNA upstream 180753 22986661 ~ 22990612 (-) False adcyap1b
XM_026937238.2 mRNA upstream 235200 23041108 ~ 23050113 (-) True clul1
XM_026936974.2 mRNA upstream 344218 23150126 ~ 23174379 (-) True mrc1b
TU82055 other downstream 167634 22632185 ~ 22635752 (-) False LOC113540019
TU81579 other downstream 868217 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 1385147 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578104.1 other downstream 1432376 21368250 ~ 21371010 (-) True LOC113539989
XR_004578082.1 other upstream 488043 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 674057 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 674144 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 687471 23493379 ~ 23493919 (-) True G69592
LOC117597074 other upstream 689127 23495035 ~ 23495897 (-) True LOC117597074

Expression Profile