RNA id: XM_026936871.2


Basic Information

Item Value
RNA id XM_026936871.2
length 3022
RNA type mRNA
GC content 0.41
exon number 9
gene id retreg1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23331016 ~ 23346573 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcgcgctcgcGGGGAGGAGCGCGAGCTCAGTCGGGGAGCGCGATGGCGGAGAGAACGGAGCGGGAGGCTACAGGAGCCCGGCGGCCCTCATCAATCAGCCCTGCGCCGACGTGCTGCCGAAGCCCGCTGATGACCTGGAAGGCGCCGGTGAAGACTTGCGCCACCTTTGCAGCGACGAACGTCGTGTTCTGGTTTGTGTCCTTTAGTCCATTCCGAGTGGTTTGTCTTCTCTGCTTGTGTCTGCTTCTATTGCTGCTGGTACAGTTGCTGAGGGACATGGCACTTTCCAGGTCAAGAGGATCCAGTTTATGGCGAAGTATGACAGGCAGCTGGGAGCTGGTGGACTCAGGTCAGGAGAGCGGGTCTGGAGCAGAAGCTCAGCTTACAGACTGCTGGGTGAGCATCAAGCTGTTCCTTGAGGAGACGTCTTCTTTCAAACAGCAGAATCCGGGGAAGTTTTGTCTTCTGGTATGCAGCTTGTGTTTTTTCCTGGCCGTACTGGGCAATTACATTCCAGGAGTTGTTATTTCATATATTATAGTGCTAGGCATATTCCTGTGGCCTGTTGTGTCGTCACATGAGTTTGGGATGTGGCTGGAACCAGTTCTGCAGAAACTGAACTTTGGAGTGGGGCACTTCCTGCAAAAGATAAAAGAGAATCATGAAAAGAGATTACTCCAAGCAGAGGCTGAGAAAGAAAGCATTGAAGCTGATCTGTCCTCAATGTTCCCTAAGCTGGACTCCACGGTGTGTAGGGAGCTGTCTGTATCAGACACAGAAGTCTCTGAAGTAACATGGACTGATAACGGCACCTTTAACTTATCAGAAGGACACACACCTCAGACAGAGAACTCAGAGGatttagatcgtCGCAGCGAGGAGGAGGTGTTCTCTGGTGGCCTCACTGACTTTCCCTCCTTGGATAATGGTGCAGGAACGAATGGGGATGATGAGGACCTGAGCATTGGCCTGCCCACCACGTCCATCCCCCAGCACAGAGTGGCTCGAGGGACAGGTGTGGGGGACGAGGCTGCGGTGACTCAAGCTTTGGGACTTCTACAGAGGACGGCCGAGAACGCCATTACAGCTGCAGTCACTGCTGCCATACAAGAGCGGCTGGAGTCGGCGATTGCTGACAACACAGACAGCGAGGCTGAGGACTTTGAGCTGCTGGACCAGTCTGAGCTTGAACATATGGAGGGTGACCTGGGCCTGGAGAGTGAGAATGGTGAGCCTCAGGCCAAAGACGCCAAAAATGCTGGTTTTTTCTCCAAACTGCTCGGGCACCAGTAATGACATCATCTTTGCAATGAGGTAGAAGCGTGAGTAGAAAACAGTCCTAGAGACTGGGGAAGGTCCAGATTAATGACGGtattccattgttttttttaatgttaaaatgtttcaattaaATCACCTTGCAGTAAATTCCAAATCCACAGAGGAACGATGCTTCTTGTACAATGATGTGTGAGGGAAGGAATGAGGGTTTGAtactttcaggtttttttttttatcttcttcaTTTACCCACCTTAAAATGGTTTCAGACCTGGTCcccattttaaaacaaattctataaaactttttttcatttgtttgtgttgatttgtgatctaaacatttgtttgtgcttttttgGTTTTTGAGAAATTATAGTGGCTATATTTCACTGTAAAACTATGGCCATGAGTGACGTTGCAGACACCAACTCAACTCAAACCAAACCAATATCTAAACAAATTAGTGTCAAATGTTTGTACTGTACAACAGTttctgcttgattttttttttttgatgtattACATTCAATTCACAGTGACATCACTCTCAGACTTACATTCATACTGTAATATCTCAAAAACCAAAacaccaaaataaataatttttcatgaCATAAAACCAGTTCAAAcgttttaatttcttttcatatGGGGTGCCAGCTTAATAAAGGGTAGTTTCAGTTAGAGGGAGATTCtcattatgctgctgccaaaTGAACTTGTTATAAAAGTTAGTGAGTGATGTGCAGATCATCTCCTCTCAGCACCTTCTTTCCTGATAATATACACGGCTCAAAGGCCAAAGAGACAAGGCCTCTCACAAAAAGACAATCAGTAGGGTTTCCACATGAATAACTACATCGTAACCAAAAAATTGTATTCATCTATAACTCAAGCAGATAATCATGAAATATGTACTTCTTATGTTGCCTTTTTTTAggctttgtattttttaaaaattaaacattgttttgGAGCTGGATGTCTCAATACAAGACTTCGCATGaataatcttttatttgtatttgcacCTTATTTATAGAGCGATGCGACTAGGCATTAGAGCACGCTGACACTGAGCTGAACTGTTTTGagtacattatttaaaaagattttatattctttggcccattctttctatctttccctctcttcctctctcatatatatatatatatatatatatatatatatatatatatatatatatatatggtatatatatatatatggtccAGTTTTATTAGCAGATTTGGTTGCATTTTGTTCCAAAGTGAAATGAAGatggattaaagaaaaaaaagatggctgACATTTGGCCCCACTTCACTCCTCTTTATATCCACTGCACTGGGGGTTATATAGGTTTAAAATCTGTCATTATTCTGTGAGGTACTTTATATCTATCTAAAATCACTTTCTAAATGTCCTATGAATTGTACTATGAAATAATGTAAACAGCTCTTCTAGTAACACAATGACTCAATATGAACTTTTCTAATGTGATTAATATGAACATTAtacaaaaatgatttgtttcagtgtcagtgtgattCCAAATGCATCTGAATGTACTAtttattccttcctttcttcttctctcctgaTAGATTACTTCACATACATATGATTGCCTTATATGCCTGTGTGAATTGTGTGTCagaatgaaagaacaaaaaaatatagttgtatgtaaattatcttaaaaatgtgattaaaatatgAAGATTTAAAGTCA

Function

GO: NA

KEGG:

id description
K23880 RETREG; reticulophagy regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82439 lncRNA downstream 52235 23278575 ~ 23278782 (-) True G69503
XR_004578004.1 lncRNA downstream 57403 23272162 ~ 23273614 (-) True LOC117597081
TU82235 lncRNA downstream 275634 23054514 ~ 23055383 (-) True G69320
TU82146 lncRNA downstream 521768 22808906 ~ 22809249 (-) True G69254
TU82140 lncRNA downstream 525109 22803386 ~ 22805908 (-) True G69248
TU82494 lncRNA upstream 50091 23396664 ~ 23397963 (-) True G69551
TU82581 lncRNA upstream 106660 23453233 ~ 23454221 (-) True LOC113540115
XR_003403997.2 lncRNA upstream 106767 23453340 ~ 23454204 (-) False LOC113540115
XR_004577997.1 lncRNA upstream 106767 23453340 ~ 23454204 (-) False LOC113540115
TU82643 lncRNA upstream 247758 23594331 ~ 23594544 (-) True G69649
XM_026936264.2 mRNA downstream 8406 23318535 ~ 23322611 (-) True and2
XM_034303435.1 mRNA downstream 8422 23318535 ~ 23322595 (-) False and2
XM_026936266.2 mRNA downstream 8423 23318535 ~ 23322594 (-) False and2
XM_026935797.2 mRNA downstream 24083 23292049 ~ 23306934 (-) False lrrcc1
XM_026935796.2 mRNA downstream 24085 23292048 ~ 23306932 (-) False lrrcc1
XM_026935903.2 mRNA upstream 29883 23376456 ~ 23382888 (-) True nol7
XM_034303846.1 mRNA upstream 62841 23409414 ~ 23418890 (-) True LOC113540008
XM_034303847.1 mRNA upstream 83727 23430300 ~ 23442743 (-) True LOC117597115
XM_034303848.1 mRNA upstream 100232 23446805 ~ 23463725 (-) True LOC113540011
XM_034303623.1 mRNA upstream 119844 23466417 ~ 23505181 (-) False LOC113540113
XR_004578082.1 other downstream 24083 23293951 ~ 23306934 (-) False lrrcc1
TU82055 other downstream 695265 22632185 ~ 22635752 (-) False LOC113540019
TU81579 other downstream 1395848 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 1912778 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578105.1 other downstream 1960013 21368250 ~ 21371004 (-) False LOC113539989
LOC117597073 other upstream 133392 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 133479 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 146806 23493379 ~ 23493919 (-) True G69592
LOC117597074 other upstream 148462 23495035 ~ 23495897 (-) True LOC117597074
LOC117597075 other upstream 149384 23495957 ~ 23497021 (-) True LOC117597075

Expression Profile