Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU82581 |
| length | 580 |
| lncRNA type | intronic |
| GC content | 0.39 |
| exon number | 3 |
| gene id | LOC113540115 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 23453233 ~ 23454221 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0030163 | protein catabolic process | biological_process |
| GO:1901565 | organonitrogen compound catabolic process | biological_process |
| GO:0009057 | macromolecule catabolic process | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU82494 | lncRNA | downstream | 55270 | 23396664 ~ 23397963 (-) | True | G69551 |
| TU82468 | lncRNA | downstream | 121698 | 23331016 ~ 23331535 (-) | False | retreg1 |
| TU82439 | lncRNA | downstream | 174451 | 23278575 ~ 23278782 (-) | True | G69503 |
| XR_004578004.1 | lncRNA | downstream | 179619 | 23272162 ~ 23273614 (-) | True | LOC117597081 |
| TU82235 | lncRNA | downstream | 397850 | 23054514 ~ 23055383 (-) | True | G69320 |
| TU82643 | lncRNA | upstream | 140110 | 23594331 ~ 23594544 (-) | True | G69649 |
| TU82692 | lncRNA | upstream | 196830 | 23651051 ~ 23651866 (-) | True | G69691 |
| TU82956 | lncRNA | upstream | 467885 | 23922106 ~ 23922538 (-) | True | G69916 |
| XR_004578012.1 | lncRNA | upstream | 477112 | 23931333 ~ 23932235 (-) | True | LOC117597086 |
| TU83094 | lncRNA | upstream | 684072 | 24138293 ~ 24138492 (-) | True | G70025 |
| XM_034303847.1 | mRNA | downstream | 10490 | 23430300 ~ 23442743 (-) | True | LOC117597115 |
| XM_034303846.1 | mRNA | downstream | 34343 | 23409414 ~ 23418890 (-) | True | LOC113540008 |
| XM_026935903.2 | mRNA | downstream | 70345 | 23376456 ~ 23382888 (-) | True | nol7 |
| XM_026936871.2 | mRNA | downstream | 106660 | 23331017 ~ 23346573 (-) | True | retreg1 |
| XM_026936264.2 | mRNA | downstream | 130622 | 23318535 ~ 23322611 (-) | True | and2 |
| XM_034303623.1 | mRNA | upstream | 12196 | 23466417 ~ 23505181 (-) | False | LOC113540113 |
| XM_026936355.2 | mRNA | upstream | 12196 | 23466417 ~ 23505181 (-) | True | LOC113540113 |
| XM_026936182.2 | mRNA | upstream | 83207 | 23537428 ~ 23544732 (-) | True | LOC113540016 |
| XM_026936998.2 | mRNA | upstream | 92949 | 23547170 ~ 23583496 (-) | True | amph |
| XM_034304072.1 | mRNA | upstream | 92949 | 23547170 ~ 23583495 (-) | False | amph |
| XR_004578082.1 | other | downstream | 146299 | 23293951 ~ 23306934 (-) | False | lrrcc1 |
| TU82055 | other | downstream | 817481 | 22632185 ~ 22635752 (-) | False | LOC113540019 |
| TU81579 | other | downstream | 1518064 | 21934526 ~ 21935169 (-) | True | G68760 |
| trnaa-ugc | other | downstream | 2034994 | 21418168 ~ 21418239 (-) | True | trnaa-ugc |
| XR_004578105.1 | other | downstream | 2082229 | 21368250 ~ 21371004 (-) | False | LOC113539989 |
| LOC117597073 | other | upstream | 25744 | 23479965 ~ 23483850 (-) | True | LOC117597073 |
| TU82584 | other | upstream | 25831 | 23480052 ~ 23480566 (-) | False | LOC117597073 |
| TU82579 | other | upstream | 39158 | 23493379 ~ 23493919 (-) | True | G69592 |
| LOC117597074 | other | upstream | 40814 | 23495035 ~ 23495897 (-) | True | LOC117597074 |
| LOC117597075 | other | upstream | 41736 | 23495957 ~ 23497021 (-) | True | LOC117597075 |
