RNA id: TU83094


Basic Information

Item Value
RNA id TU83094
length 200
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G70025
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24138293 ~ 24138492 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgtatgatccctcttattttggtaaaataataaacattttgcagattctgaaagggggatgtaaacttttgacctcaactgtatgccTGGTTTGGAATGTGTGGGAAATTTAAGTTATTCTGTATAGCTTTGCTGCAAGTGCTGAGAACTGTTGTTGCATGCGTGTGATTCAGCTTGTCCCCTGTGAACCAATGCCAC

Function

GO: NA

KEGG:

id description
ko00710 Carbon fixation in photosynthetic organisms

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578012.1 lncRNA downstream 206058 23931333 ~ 23932235 (-) True LOC117597086
TU82956 lncRNA downstream 215755 23922106 ~ 23922538 (-) True G69916
TU82692 lncRNA downstream 486427 23651051 ~ 23651866 (-) True G69691
TU82643 lncRNA downstream 543749 23594331 ~ 23594544 (-) True G69649
XR_003403997.2 lncRNA downstream 684089 23453340 ~ 23454204 (-) False LOC113540115
TU83095 lncRNA upstream 7086 24145578 ~ 24145784 (-) True G70026
TU83096 lncRNA upstream 7398 24145890 ~ 24146241 (-) True G70027
TU83122 lncRNA upstream 40539 24179031 ~ 24179864 (-) True G70044
TU83444 lncRNA upstream 427709 24566201 ~ 24566511 (-) False ccdc24
TU83664 lncRNA upstream 734138 24872630 ~ 24872833 (-) True G70540
XM_034304058.1 mRNA downstream 22870 24110472 ~ 24115423 (-) False bfsp2
XM_026937208.2 mRNA downstream 22870 24110472 ~ 24115423 (-) True bfsp2
XM_026936941.2 mRNA downstream 54011 24045734 ~ 24084282 (-) True nrbp2a
XM_026936862.2 mRNA downstream 96910 24028301 ~ 24041383 (-) True puf60a
XM_034303976.1 mRNA downstream 96948 24029784 ~ 24041345 (-) False puf60a
XM_026936857.2 mRNA upstream 1307 24139799 ~ 24145026 (-) True LOC113540393
XM_034303195.1 mRNA upstream 10080 24148572 ~ 24161793 (-) True prpf4ba
XM_026936854.2 mRNA upstream 11880 24150372 ~ 24161793 (-) False prpf4ba
XM_034303196.1 mRNA upstream 11880 24150372 ~ 24161793 (-) False prpf4ba
XM_026936541.2 mRNA upstream 427249 24565741 ~ 24586048 (-) True ccdc24
XR_003404116.1 other downstream 101439 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 606277 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 620623 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 621934 23515699 ~ 23516359 (-) True LOC113540114
LOC117597116 other downstream 623358 23514374 ~ 23514935 (-) True LOC117597116
TU83344 other upstream 165882 24304374 ~ 24304926 (-) True G70255
TU84653 other upstream 2235266 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 2333588 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 2398610 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 2958110 27096602 ~ 27100858 (-) True G71832

Expression Profile