RNA id: XM_026936542.2


Basic Information

Item Value
RNA id XM_026936542.2
length 1970
RNA type mRNA
GC content 0.45
exon number 9
gene id ccdc24
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24565741 ~ 24586048 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCAATCTAACTAAAGCACGTATTTAATAGTGTTGCTACAAACAGTGGAAAAATAGTTTTAGCCagAGTGCACAGAATGGTGTTAAATGAATGATGTCAGTGGCTTAATGGAGCCtgtccagcagcagcagtgtgtatgGAGCCTGATAAAGGAGTGTGTGCCAGACTCTGAGCTTCCTGAGATAAGGGCTATACTTGGGGATGCACTCATAGACATGTACACAGAAATCCACTCTGAGGTGCAGATGTGGGAGCAGATGTGGCATGAGGTGCATGATGGAAAATCCCAGATGCCCCATTCCTCTCTTGCTGACCCTCCAGCTGTTAAAGAGCTGCTGCGTTCTGAGctccagctgctgctgctcagtCTGAGACAGCAAGCCGTTACACTGGGCAGagatGGAGATGAAGTCATGTCCCGGTACAGTCCCAGGGTGGTGAGTTATGCACTCGGCACAGAGAGACAGCGAAGTCCAGACAGCACTGAGTGTACAGCATCAACTAGCAGGCCTGAGTCCAGCAGGTCAAGCTCAAGGCTATCGTCTCACTCCAGCATTGAAGATGAAATTGAAGCTCTGCGCCATAAACTGAACATCACCCATATAAACGAGGTTGTGTCCCATCTAAAATCAGTTCTTACTGAGGAGTGTGAAGTTCTGAAAAATGATGTTCTGTTGCTGCAGgagagTGTGGAGTTGGAATATCTGAAGCAGAGCGGCTTCATGGAGCCCACTCTAACAGAGCTGAAAAAGGAACGGCGACTTATCCAGCAAGACTTGGAAGCCCTGAATCTGATGAATGACTCTACATGCACAGATAAGCTGAAGCCTGATGTTTCTCAGATTCCCAGCAGAGAAATGAAGCTGACTGGTTTGGCAAATGACTCTGAGAAGAAGCAGTCAGTCTCACCAGTCTCACCTAAAACAGATTTTCTTCAACCAAAGCCTCCTCCAGCTGTAGCACTACACGATAACAGACCCGCTCTCCTGGGCAAAACCAGGCACAGAATTTCTCTTAAGGTTACACAGCTTCCAGGGTCGTCCCCAAATCCTCCACAGGAACTGGATTTGGAGAACTCTCATATCCAGCCAGTGCCGCAAATTAGCTCTGCTTCTTCAGCCACTGTACAGAGTTCTCCAAGTGAGTCGAAAATTGCATTTGTAGGATCTGCAACCTGTAGACTTAAAGACAGGGCACTGGCTGGGCATTTCAGAGCTGCCCCGACACCACTGATACCTGCCCCACCTGCAGGGCAGAGAGccaccagcagggggcagcggGTGGGCAGACGCCTGGCACTCCATCAGACAGGAAACCTGCTCAGTGCCACCTGAACGCACCAGCTCCATATTCTCTCAGATTAAACTGCATGATCTGGCAGCTGGCTTagacatattatttacattataaactTTATAGTAGAGGTTTAACAAAAGACACCGcatgtttacacatttatttcatacatGCAATGCAATTAAACAGCTCAGTTATTCCATAAAAGGCACACAGACAGTTgatctttaaaataaactttattttaccATTTGAAATTGAACCATTTAAGATACACAGCTGATGCGACTAAGACAATGTTTGATGCAATTTGGCCCTAAGATTCCAAAGACATGGTTAGATATGTTTGATAGAAAGTTCTGAGCTCATTTTCATGGTGCTTTACTCTCCCTCCCTGCCCTCACAGTAATTTCACCAGGACGTGACAGTAGTGAACAATACAGTAGTGGACACAGACCTGCAGAACCTTTGAGTAGAAGAGAATGGGTGGGGTTGTAATATATGTTGCTATTAAACAGCATAAAAATGATCATGTAAAGTGCTGGAACAGCATGAAAATGCAAGATGATGCATTCTGTTCCCAAATAAAAGGTCTCTTTACGACAGCAAGCATCtggatcaaaaaaaaaaaaatcacagttttagttatgctttactgtcattgtccaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83122 lncRNA downstream 385877 24179031 ~ 24179864 (-) True G70044
TU83096 lncRNA downstream 419500 24145890 ~ 24146241 (-) True G70027
TU83095 lncRNA downstream 419957 24145578 ~ 24145784 (-) True G70026
TU83094 lncRNA downstream 427249 24138293 ~ 24138492 (-) True G70025
XR_004578012.1 lncRNA downstream 633506 23931333 ~ 23932235 (-) True LOC117597086
TU83664 lncRNA upstream 286683 24872630 ~ 24872833 (-) True G70540
TU84048 lncRNA upstream 823767 25409714 ~ 25445048 (-) True G70906
TU84116 lncRNA upstream 967130 25553077 ~ 25554229 (-) True G70970
TU84165 lncRNA upstream 985362 25571309 ~ 25571525 (-) True G71013
TU84189 lncRNA upstream 1024290 25610237 ~ 25610440 (-) True G71037
XM_034303195.1 mRNA downstream 403948 24148572 ~ 24161793 (-) True prpf4ba
XM_026936854.2 mRNA downstream 403948 24150372 ~ 24161793 (-) False prpf4ba
XM_034303196.1 mRNA downstream 403948 24150372 ~ 24161793 (-) False prpf4ba
XM_026936857.2 mRNA downstream 420715 24139799 ~ 24145026 (-) True LOC113540393
XM_026937208.2 mRNA downstream 450318 24110472 ~ 24115423 (-) True bfsp2
XM_026937068.2 mRNA upstream 15923 24601870 ~ 24740260 (-) True b4galt2
XM_026937077.2 mRNA upstream 162154 24748101 ~ 24755113 (-) True atp6v0b
XM_026936660.2 mRNA upstream 297799 24883746 ~ 24911790 (-) True ptch2
XM_034304115.1 mRNA upstream 333580 24919527 ~ 24963142 (-) False eif2b3
XM_026937228.2 mRNA upstream 333704 24919651 ~ 24963880 (-) True eif2b3
TU83344 other downstream 260815 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 528887 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 1033725 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 1048071 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 1049382 23515699 ~ 23516359 (-) True LOC113540114
TU84653 other upstream 1787811 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 1886133 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 1951155 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 2510655 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 2617836 27203783 ~ 27204186 (-) True G71909

Expression Profile