RNA id: TU84552


Basic Information

Item Value
RNA id TU84552
length 689
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G71370
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26156163 ~ 26156851 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTATTAACTTATAAAGTCATAAAGTCATATGAAAGAatttatccacactgcattggctcccaatcaaatttcgtattgattataaaatactactattgacctataaagcactaaatggtctcgcgccacagtacctgagcgaacttttggtcttttatgatccgtcacgcctactcagatcaaaagatgcaggctatttgttggtacctcgaataatgcgggctacagctgggggtagagctttctcatacaaagccccacagttatggaacagccttccacttagtgttcggggctcagacacagtctcagtgtttaagtctaggctgaaaacatatttgtttagtcaagccttttgtgaatagttttcttaggtacaggggcaggtctggagggtttcacaggcatagagtgttgtggtgaaatgggatgtttggatgctgtcgccccccccactctcacacgttcactcaggtttgtcgacggtggagtggctggctgccttatgtcccagggtgccctcatgtctgtgttagcttctggctctccctttcagttatgctgtcatagctagtcttgccggagtccctgcttgcactctgcatgcaaagtacatcgtgcttaaccattagaggacaaaagctcacctaacaatctcttcctttctctccatctctctctctccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84545 lncRNA downstream 25315 26130617 ~ 26130848 (-) True G71363
TU84543 lncRNA downstream 26309 26129648 ~ 26129854 (-) True G71361
TU84540 lncRNA downstream 28684 26127252 ~ 26127479 (-) True G71358
TU84536 lncRNA downstream 31079 26107466 ~ 26125084 (-) True G71354
TU84494 lncRNA downstream 153337 26002601 ~ 26002826 (-) True G71313
TU84558 lncRNA upstream 54592 26211443 ~ 26211682 (-) True G71376
TU84576 lncRNA upstream 72028 26228879 ~ 26229191 (-) True G71386
TU84635 lncRNA upstream 103838 26260689 ~ 26289916 (-) True LOC117597203
XR_004578102.1 lncRNA upstream 103870 26260721 ~ 26288211 (-) False LOC117597203
TU84665 lncRNA upstream 211835 26368686 ~ 26382522 (-) True G71456
XM_034303577.1 mRNA downstream 183158 25970634 ~ 25973005 (-) True LOC117597050
XM_026937257.2 mRNA downstream 223402 25904440 ~ 25932761 (-) True tnn
XM_026937049.2 mRNA downstream 524963 25561334 ~ 25631200 (-) True pappa2
XM_026937050.2 mRNA downstream 524963 25580417 ~ 25631200 (-) False pappa2
XM_034303716.1 mRNA downstream 730987 25423546 ~ 25425176 (-) True LOC117597083
XM_026935873.2 mRNA upstream 162436 26319287 ~ 26329275 (-) True parp2
XM_034303634.1 mRNA upstream 162436 26319287 ~ 26328755 (-) False parp2
XM_026935872.2 mRNA upstream 162436 26319287 ~ 26328732 (-) False parp2
XM_034303635.1 mRNA upstream 162436 26319287 ~ 26328181 (-) False parp2
XM_034303633.1 mRNA upstream 162436 26319287 ~ 26328181 (-) False parp2
TU83344 other downstream 1851237 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2119309 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 2624147 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 2638493 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 2639804 23515699 ~ 23516359 (-) True LOC113540114
TU84653 other upstream 216907 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 315229 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 380251 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 939751 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 1046932 27203783 ~ 27204186 (-) True G71909

Expression Profile