RNA id: TU86047


Basic Information

Item Value
RNA id TU86047
length 1121
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G72604
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28011684 ~ 28012804 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGCTTTATTTCCATCAGCAGACAAAAACGGATTTATTTCACATGCCTTCAGCTGATAAAATTAAGATAAAactattctaaaaaaaaacttaaacattGAATATGTTTCTATTAGAATCTGTGACAGCGTATCACGTTATTGCTACAGTAACAGGTGAAGACACGTTAATgttcaataaatatatattttttttctctttttttctgatttatatAATAATCACTATTAATAATGACTGTAAGCAGCATTTTAGGAAGCAAATTAAGATCCTAATAATAAAGtctttatatattaaatgtaactgtagataaaaaaaaaatctagacatgaaatttaaaataaaataaaatgtagggAAAATGATTGTTTAGTTGTTAAGGtacctaataaataaataatgaaaatgaaaggagGAGTATTTAGGGGAAATCTGTTAGTGTGACGGTAATAATTAAGTAGCGTAAACggtggaaaacacacacacgcacaaaaacTCATTAAAGGTACTTAACAATCCAGCGTTCTTTCCCAGCTAGTTTAGTTTTTGTTcgtttttgcacatttaaatctgttttttttttttttttttttgaagaaaagaaaaatatgtgcaTTTAAATGACCCCAGTTCTGCTTctctttctgagtatttctagtAATATGGAGCTTGGAAGCTAACAACAAGtatttaaattagcattttgtATATTAGAATTATATACACATCACATtaaatcattcttttttctgttgtaaAATTTGTCTGTAACAACATACAATTCAAAATTACAGGAtatgttttgggaaaaaaaaaaaatcagaaccctgaataaaaaattcaaatctcagTATTATTAGATTTTAGGTCAAATGTGAAGCATTCAGGATTACCATTCAGGATTTACCAAATAGCTAAATTCCTATTAAACAGCTCACTTtggctgttagctagctaacgatTGCCAGCTAGCTATATACATTAGCATAGCCTAACTGGTTGTAATGTTACCTAAATAGTTACGCTGGACACCCAGTGTTTAGAAAACTCGCTATTTGAACTATTATaacataaatcttttttttttatttattcgaCTACTCTGAAAGTGTCTATTTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578040.1 lncRNA downstream 25828 27977078 ~ 27985856 (-) False LOC117597146
TU86051 lncRNA downstream 31348 27974470 ~ 27980336 (-) True LOC117597146
TU85953 lncRNA downstream 40889 27569244 ~ 27970795 (-) False G72517
TU85956 lncRNA downstream 40889 27879538 ~ 27970795 (-) True G72517
TU85958 lncRNA downstream 40889 27894513 ~ 27970795 (-) False G72517
TU86109 lncRNA upstream 54778 28067582 ~ 28068084 (-) True G72652
TU86108 lncRNA upstream 55688 28068492 ~ 28069277 (-) True G72651
TU86122 lncRNA upstream 68740 28081544 ~ 28111472 (-) False G72658
TU86124 lncRNA upstream 68740 28081544 ~ 28111472 (-) False G72658
TU86126 lncRNA upstream 68740 28081544 ~ 28111472 (-) False G72658
XM_026936536.2 mRNA downstream 172587 27704281 ~ 27839097 (-) False dpp6b
XM_026936534.2 mRNA downstream 197416 27704281 ~ 27814268 (-) True dpp6b
XM_026936537.2 mRNA downstream 220013 27704281 ~ 27791671 (-) False dpp6b
XM_026936535.2 mRNA downstream 235814 27704281 ~ 27775870 (-) False dpp6b
XM_026936538.2 mRNA downstream 235877 27704281 ~ 27775807 (-) False dpp6b
XM_026937119.2 mRNA upstream 3260 28016064 ~ 28041785 (-) False prkag2b
XM_026937117.2 mRNA upstream 3260 28016064 ~ 28041785 (-) False prkag2b
XM_034304035.1 mRNA upstream 3260 28016064 ~ 28029051 (-) True prkag2b
XM_026935893.2 mRNA upstream 43908 28056712 ~ 28064529 (-) True cpdp
XM_026936704.2 mRNA upstream 62812 28075616 ~ 28093936 (-) True tsc22d2
trnat-ugu_9 other downstream 386876 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 390556 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578066.1 other downstream 455698 27547752 ~ 27555986 (-) False pcyt1aa
XR_003404034.2 other downstream 579006 27428420 ~ 27432678 (-) False LOC113540508
trnat-ugu_4 other downstream 615461 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404039.2 other upstream 3260 28016064 ~ 28041785 (-) False prkag2b
trnas-uga_1 other upstream 223382 28236186 ~ 28236267 (-) True trnas-uga_1
trnas-uga_2 other upstream 223920 28236724 ~ 28236805 (-) True trnas-uga_2
XR_004578096.1 other upstream 635520 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 860774 28873578 ~ 28882164 (-) True LOC117597037

Expression Profile