Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578040.1 |
| length | 983 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 3 |
| gene id | LOC117597146 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 27974470 ~ 27985856 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU85953 | lncRNA | downstream | 6283 | 27569244 ~ 27970795 (-) | False | G72517 |
| TU85956 | lncRNA | downstream | 6283 | 27879538 ~ 27970795 (-) | True | G72517 |
| TU85958 | lncRNA | downstream | 6283 | 27894513 ~ 27970795 (-) | False | G72517 |
| TU86050 | lncRNA | downstream | 18590 | 27912870 ~ 27958488 (-) | True | G72607 |
| TU85461 | lncRNA | downstream | 499412 | 27474765 ~ 27477666 (-) | True | tsen15 |
| TU86047 | lncRNA | upstream | 25828 | 28011684 ~ 28012804 (-) | True | G72604 |
| TU86109 | lncRNA | upstream | 81726 | 28067582 ~ 28068084 (-) | True | G72652 |
| TU86108 | lncRNA | upstream | 82636 | 28068492 ~ 28069277 (-) | True | G72651 |
| TU86122 | lncRNA | upstream | 95688 | 28081544 ~ 28111472 (-) | False | G72658 |
| TU86124 | lncRNA | upstream | 95688 | 28081544 ~ 28111472 (-) | False | G72658 |
| XM_026936536.2 | mRNA | downstream | 137981 | 27704281 ~ 27839097 (-) | False | dpp6b |
| XM_026936534.2 | mRNA | downstream | 162810 | 27704281 ~ 27814268 (-) | True | dpp6b |
| XM_026936537.2 | mRNA | downstream | 185407 | 27704281 ~ 27791671 (-) | False | dpp6b |
| XM_026936535.2 | mRNA | downstream | 201208 | 27704281 ~ 27775870 (-) | False | dpp6b |
| XM_026936538.2 | mRNA | downstream | 201271 | 27704281 ~ 27775807 (-) | False | dpp6b |
| XM_026937119.2 | mRNA | upstream | 30208 | 28016064 ~ 28041785 (-) | False | prkag2b |
| XM_026937117.2 | mRNA | upstream | 30208 | 28016064 ~ 28041785 (-) | False | prkag2b |
| XM_034304035.1 | mRNA | upstream | 30208 | 28016064 ~ 28029051 (-) | True | prkag2b |
| XM_026935893.2 | mRNA | upstream | 70856 | 28056712 ~ 28064529 (-) | True | cpdp |
| XM_026936704.2 | mRNA | upstream | 89760 | 28075616 ~ 28093936 (-) | True | tsc22d2 |
| trnat-ugu_9 | other | downstream | 352270 | 27624736 ~ 27624808 (-) | True | trnat-ugu_9 |
| trnat-ugu_7 | other | downstream | 355950 | 27621056 ~ 27621128 (-) | True | trnat-ugu_7 |
| XR_004578066.1 | other | downstream | 421092 | 27547752 ~ 27555986 (-) | False | pcyt1aa |
| XR_003404034.2 | other | downstream | 544400 | 27428420 ~ 27432678 (-) | False | LOC113540508 |
| trnat-ugu_4 | other | downstream | 580855 | 27396151 ~ 27396223 (-) | True | trnat-ugu_4 |
| XR_003404039.2 | other | upstream | 30208 | 28016064 ~ 28041785 (-) | False | prkag2b |
| trnas-uga_1 | other | upstream | 250330 | 28236186 ~ 28236267 (-) | True | trnas-uga_1 |
| trnas-uga_2 | other | upstream | 250868 | 28236724 ~ 28236805 (-) | True | trnas-uga_2 |
| XR_004578096.1 | other | upstream | 662468 | 28648324 ~ 28652425 (-) | False | LOC113540437 |
| XR_004577984.1 | other | upstream | 887722 | 28873578 ~ 28882164 (-) | True | LOC117597037 |
