RNA id: TU86126


Basic Information

Item Value
RNA id TU86126
length 1713
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G72658
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28081544 ~ 28144866 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tTCTGGTTGGAATAGATTTATTTGATCTGTCTGTAAACAAGGTGGTTAATTCATGGCATTTTCCACGCAAAATCGGGTTGTATAGATATCAGCTGGTCAGGATTTCATAATCATAAATCGGGTGCAacaaaagaaaggagagaaatgaACATGATTTGTTGACATGTTTCACTTTAATCTGTACATATTCCACAAGCCCTGGAGAGTTTGAAAATTTTAATGTCAGATATCCCAAAGAAGGTGCCATTCGAGAATCGACTCCTAACAAGGCAGCGGTTTTAAAATCCATCTCACAGTAGCAACAGATCAGATCTACATTATGGCACAGGATAcactgctttttttattattattaaagttaacAATACAACTGACTAGtggtctttttcttctttaactAATACCACCATAACCCAGAAAATTTAGTGTACACAGTTACTtcagtgtgtggttttttttgttttgttttttttgcctatttaatgaaatatttgtacCGTGCTATGACAAGTTGATATATCGCAGTTGAATAAAGCACAAATGACTTGATGTTTGAAAACTGACAGGATTAACAGACAAAATGGGGGTTAAAGGATTTAAAGTCAACAATAAGACTGCCATTTCATCTATTCAAAACATTCattgtgagaaagaaaaaaataataataataataataataatcaggtaGTTACCATTAGAGCTTTGTAATCCATCCCCAAGTCATGGATACCATTACTAGTGAAGTCAAGAGGTTAGTGTTATACTGTGTATTTGAAATGTTCAATTTCATGTTCTACAAACAGATGAAGCTAGCAGTCGATCCTTCAGTAATCTGTTAATCCtccaaaatgcagaaaaaaaattggtcctactggagaaaaaaaataatatctataatatGAATGGACACCAAACCAGAGTTACATCGGAAGGgcagtgctttaaaaaaattacaataaatcaaaATCACTAGCTGGTAAATAAGTTGCTAAGTGGCTATATTAGCGGTGGAATGTCCTTAGAGTCCAGAAGcgatttttgttttaaacctAGACGTTGTAAATGCTGATCTGCCATCacattcaaaagaaaaaaaaaaaaaaaaaatccaacattaCATCGAAGACTCACAACACCACATCCAGATACAACAGTAAAAGCATTGGATGTTGTATTTTGAATAAAACTGGTTACAAGTATAAGGGCAAGAATTATGTAGTGTGGTtcaatttattacttttttttttttttttttttttttttttttttaaattttgagtGTGGTGTTTTCCGCCACCTCATTGTCCGAGTAAAGATTGCAGAAGCTtaaagagacaaagacaaaggcGTCCTGTGTTTAGTCTCTGAGCTGCTGTGAACCTTGACTGAGGAACGGCGTGTACCTTCAGGAGATTTAGTGTTCGAGACGCCGTGTTCACGTCCACCATCACGGGTTTGGCGCTGACGTACAACTAACCTGCCAGTGTACTCACatgaacttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccttcatTGATTTGTTGATTGATTCAGACATTGATTCATTACCGAAGTGATTCATTTCTGAAGTTATCGGTACGTCTTTCAAATATCACAAAACATTTACTATCACGATTACACGTTAATCATCTCATTTATTACTATTCTCATATTTTACTTGATCGTACCTAGACTAACTATCATAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86108 lncRNA downstream 12267 28068492 ~ 28069277 (-) True G72651
TU86109 lncRNA downstream 13460 28067582 ~ 28068084 (-) True G72652
TU86047 lncRNA downstream 68740 28011684 ~ 28012804 (-) True G72604
XR_004578040.1 lncRNA downstream 95688 27977078 ~ 27985856 (-) False LOC117597146
TU86051 lncRNA downstream 101208 27974470 ~ 27980336 (-) True LOC117597146
TU86139 lncRNA upstream 27394 28138866 ~ 28140438 (-) True G72665
TU86171 lncRNA upstream 86519 28197991 ~ 28199809 (-) False LOC117597043
TU86175 lncRNA upstream 87747 28199219 ~ 28199809 (-) False LOC117597043
TU86202 lncRNA upstream 231662 28343134 ~ 28383460 (-) True G72709
TU86215 lncRNA upstream 254185 28365657 ~ 28379132 (-) True G72720
XM_026935893.2 mRNA downstream 17015 28056712 ~ 28064529 (-) True cpdp
XM_026937119.2 mRNA downstream 39759 28016064 ~ 28041785 (-) False prkag2b
XM_026937117.2 mRNA downstream 39759 28016064 ~ 28041785 (-) False prkag2b
XM_034304035.1 mRNA downstream 52493 28016064 ~ 28029051 (-) True prkag2b
XM_026936538.2 mRNA downstream 305737 27704281 ~ 27775807 (-) False dpp6b
XM_026936392.2 mRNA upstream 5620 28117092 ~ 28122103 (-) True ahsg2
XM_034303980.1 mRNA upstream 12610 28124082 ~ 28140907 (-) False LOC113540134
XM_026936390.2 mRNA upstream 12610 28124082 ~ 28138768 (-) True LOC113540134
XM_034303545.1 mRNA upstream 46357 28157829 ~ 28170981 (-) False LOC113540126
XM_034303544.1 mRNA upstream 46357 28157829 ~ 28169477 (-) True LOC113540126
XR_003404039.2 other downstream 39759 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 456736 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 460416 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578066.1 other downstream 525558 27547752 ~ 27555986 (-) False pcyt1aa
XR_003404034.2 other downstream 648866 27428420 ~ 27432678 (-) False LOC113540508
trnas-uga_1 other upstream 124714 28236186 ~ 28236267 (-) True trnas-uga_1
trnas-uga_2 other upstream 125252 28236724 ~ 28236805 (-) True trnas-uga_2
XR_004578096.1 other upstream 536852 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 762106 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 762108 28873580 ~ 28884965 (-) False LOC117597037

Expression Profile