Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU86175 |
| length | 485 |
| lncRNA type | sense_over |
| GC content | 0.34 |
| exon number | 2 |
| gene id | LOC117597043 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 28197991 ~ 28225603 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU86125 | lncRNA | downstream | 54353 | 28104546 ~ 28144866 (-) | False | G72658 |
| TU86139 | lncRNA | downstream | 58781 | 28138866 ~ 28140438 (-) | True | G72665 |
| TU86124 | lncRNA | downstream | 87747 | 28081544 ~ 28111472 (-) | False | G72658 |
| TU86202 | lncRNA | upstream | 143325 | 28343134 ~ 28383460 (-) | True | G72709 |
| TU86215 | lncRNA | upstream | 165848 | 28365657 ~ 28379132 (-) | True | G72720 |
| TU86223 | lncRNA | upstream | 197852 | 28397661 ~ 28471771 (-) | True | G72726 |
| TU86306 | lncRNA | upstream | 467514 | 28667323 ~ 28668643 (-) | True | G72796 |
| XR_004577998.1 | lncRNA | upstream | 513225 | 28713034 ~ 28717955 (-) | True | LOC117597077 |
| XM_034303542.1 | mRNA | downstream | 3162 | 28173321 ~ 28196057 (-) | True | LOC113540124 |
| XM_034303543.1 | mRNA | downstream | 3162 | 28174936 ~ 28196057 (-) | False | LOC113540124 |
| XM_034303545.1 | mRNA | downstream | 28238 | 28157829 ~ 28170981 (-) | False | LOC113540126 |
| XM_034303544.1 | mRNA | downstream | 29742 | 28157829 ~ 28169477 (-) | True | LOC113540126 |
| XM_026936390.2 | mRNA | downstream | 60451 | 28124082 ~ 28138768 (-) | True | LOC113540134 |
| XM_034303645.1 | mRNA | upstream | 39087 | 28238896 ~ 28275315 (-) | True | cdc73 |
| XM_034304138.1 | mRNA | upstream | 76887 | 28276696 ~ 28286658 (-) | True | ro60 |
| XM_026936156.2 | mRNA | upstream | 276622 | 28476431 ~ 28491847 (-) | True | shha |
| XM_034303284.1 | mRNA | upstream | 375099 | 28574908 ~ 28605243 (-) | True | lmbr1 |
| XM_034303285.1 | mRNA | upstream | 375099 | 28574908 ~ 28605242 (-) | False | lmbr1 |
| XR_003404039.2 | other | downstream | 157434 | 28016064 ~ 28041785 (-) | False | prkag2b |
| trnat-ugu_9 | other | downstream | 574411 | 27624736 ~ 27624808 (-) | True | trnat-ugu_9 |
| trnat-ugu_7 | other | downstream | 578091 | 27621056 ~ 27621128 (-) | True | trnat-ugu_7 |
| XR_004578066.1 | other | downstream | 643233 | 27547752 ~ 27555986 (-) | False | pcyt1aa |
| XR_003404034.2 | other | downstream | 766541 | 27428420 ~ 27432678 (-) | False | LOC113540508 |
| trnas-uga_1 | other | upstream | 36377 | 28236186 ~ 28236267 (-) | True | trnas-uga_1 |
| trnas-uga_2 | other | upstream | 36915 | 28236724 ~ 28236805 (-) | True | trnas-uga_2 |
| XR_004578096.1 | other | upstream | 448515 | 28648324 ~ 28652425 (-) | False | LOC113540437 |
| XR_004577984.1 | other | upstream | 673769 | 28873578 ~ 28882164 (-) | True | LOC117597037 |
| XR_004577982.1 | other | upstream | 673771 | 28873580 ~ 28884965 (-) | False | LOC117597037 |
