RNA id: XM_034303546.1


Basic Information

Item Value
RNA id XM_034303546.1
length 1774
RNA type mRNA
GC content 0.40
exon number 11
gene id LOC117597043
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28197991 ~ 28225603 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTGTATTTGTGGTTAATCTGAAGGTTTTATGCTGTGatctgaggaagaagaggaaaagatgaAGATTATTATCCTGGCTTTTTCTATTTGGTCATGCCAGGCTGTGAGGGGTCAAACATCATGTACTGCACCATTTGTGCCAAATGGTAAACCTGAAAATGACCTAGCAGAATCCTATCCCACTGGAAGCTTTATTAGATATGTATGTGACAGCGGCTATGAGTTTGTAGAAACACATTATGCACTGTGTGAAGATGGAACTTGGAATCTGCCAGTTTGTAAACTTCTAACATCATGTACTGTGCCATTTGTGCAAAATGCTGAGCTCGCAGATGAGTTTACAGCAGCACTCTATCCTACTGGAAGCTTTGTAAGATTCATATGTGACAGAGGCTATGAGTATGAAGGAACAAAACATGCATGGTGTGTAGATGGAACTTGGACGCTaccagtgtgtaaatTTGTAACTCAAACAACATGTGCTGCCCCACGTGTGCCAAACGCCCAACCTGCAGATGTATTAGCAAAATCCTATTCTACTGGAGACATTGTTAGATTTGTATGTGACAGTGGCTACGAGTTTGAAGGAACAGATTCTGCACAGTGTGAAGATGGAGTTTGGAGGCTGCCAGTGTGTAAAGTTCTAGATAAACCAACGTGTCCTAAACCATGGGTGCAAAATGCTTATCCTGCAGCTGCATTAAAAAACTCCTATAATAATGGAGACACTGTAAGATTTGTATGTAACAGAGGCTATAGGTTTGAAGGAACAGATTCTGCAGAGTGTGTAGATGGAACCTGGAGGCTGCCAGTGTGTAAAGATCCAACATCATGTACTACCCCACATGTGCCAAATGCCCGACCTGCAGAAACGTTAGCAGAGGTCTATTCTAATGGAAGATATGTGAGATTTGAATGTAATCGCGGCTATGAGTTTGAAAGAAGAGACCCATATGCACAGTGTGTAAATGGAACTTGGAGGCTGCCAGTGTATTCCCATAGACATCATGACAGCTCTGAGGACCATGGTGGATCTCTAGGTCCTGATACTGCGGTACTGTTGCCGGTCAGTATTTGTGGATCTCAACCCTTTGTTGAAAATGGAGATGTTACAATACTACCAGGTGAAAGGGAGTTAAAAGTTCAATGTCAGAGATTTTTTAAACTACAAGGACCTGAAAAAATAAGATGTGTTAATGAAAAATGGACAGAGCTCCCAGTGTGTAAACCTCCGTGTAAACTGGATAGGACACTTATTCATTCTAATGATGAATATctgcaggagggtgaagagaaGACATTTTACTGTCATAACTCATATAAGAAAACGACTGTCCGCTGCTTTAAAGGAACAGCAATCTTTAGTGAATGTCGCTTCTTCGACTGGTGATCTGTATCAACGGCTAAATCAGAAAAACCGACATCTGCAGAGCTCCTGCTATTGATCAGAAATCTTCCTTCTCggagtaaatgttttttaagcaaaaaaaatctgctaaGAAGAAAAAGCCATTCAGCCTCACTGTGTGTTGGAGGTTTAACTCGTTTAATTCCTGACTTATTATTCAGCTGTTAGTGTTTAGTAACTACAGTGGAACTATAAAGAAGGATTTACATTtttgagagtgaggaatgtaaatcTGGAGCAcctaagataaaaaaaatttaaaaaataaataaataaatctatccTGTGTGAAGATGAACTGAAGATGGTGGATTATtacataaacaaagaaaaacagatctGAACCATTAAAATTTATGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86125 lncRNA downstream 53157 28104546 ~ 28144866 (-) False G72658
TU86139 lncRNA downstream 57585 28138866 ~ 28140438 (-) True G72665
TU86124 lncRNA downstream 86551 28081544 ~ 28111472 (-) False G72658
TU86202 lncRNA upstream 117531 28343134 ~ 28383460 (-) True G72709
TU86215 lncRNA upstream 140054 28365657 ~ 28379132 (-) True G72720
TU86223 lncRNA upstream 172058 28397661 ~ 28471771 (-) True G72726
TU86306 lncRNA upstream 441720 28667323 ~ 28668643 (-) True G72796
XR_004577998.1 lncRNA upstream 487431 28713034 ~ 28717955 (-) True LOC117597077
XM_034303542.1 mRNA downstream 1966 28173321 ~ 28196057 (-) True LOC113540124
XM_034303543.1 mRNA downstream 1966 28174936 ~ 28196057 (-) False LOC113540124
XM_034303545.1 mRNA downstream 27042 28157829 ~ 28170981 (-) False LOC113540126
XM_034303544.1 mRNA downstream 28546 28157829 ~ 28169477 (-) True LOC113540126
XM_034303980.1 mRNA downstream 57116 28124082 ~ 28140907 (-) False LOC113540134
XM_034303645.1 mRNA upstream 13293 28238896 ~ 28275315 (-) True cdc73
XM_034304138.1 mRNA upstream 51093 28276696 ~ 28286658 (-) True ro60
XM_026936156.2 mRNA upstream 250828 28476431 ~ 28491847 (-) True shha
XM_034303284.1 mRNA upstream 349305 28574908 ~ 28605243 (-) True lmbr1
XM_034303285.1 mRNA upstream 349305 28574908 ~ 28605242 (-) False lmbr1
XR_003404039.2 other downstream 156238 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 573215 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 576895 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578066.1 other downstream 642037 27547752 ~ 27555986 (-) False pcyt1aa
XR_003404034.2 other downstream 765345 27428420 ~ 27432678 (-) False LOC113540508
trnas-uga_1 other upstream 10583 28236186 ~ 28236267 (-) True trnas-uga_1
trnas-uga_2 other upstream 11121 28236724 ~ 28236805 (-) True trnas-uga_2
XR_004578096.1 other upstream 422721 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 647975 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 647977 28873580 ~ 28884965 (-) False LOC117597037

Expression Profile