RNA id: XM_034303995.1


Basic Information

Item Value
RNA id XM_034303995.1
length 3935
RNA type mRNA
GC content 0.52
exon number 25
gene id usp33
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29148638 ~ 29171921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGGCCGAATTCCAAACGGCTCCGAATTAGAaaagtagtgcactatgtaggctGTAGACGTCAGTTATTCCGCGCAGTACGTAGTGCGCATGTGCAGGGAGTTGTGAGGCGTTTGGGATACGGCCGGCTCAGAACCGGAAATAGCGGTTAGGGCTGTATCATGTAGTGTTACAGGGCACGGAAAGTGGATGTCAGCCGTTGCTAGGTGGATCTCTGACACTTTTAGCATCACAAAACAAGatgatttttaagaaatatgtaGCTTGAGGAAAGACGAGGACGAGATTTTGACATCTTCATCAGCAAGTTGGAATCTTTATTTACGTCTTTGGAGctgtgaTAGAGTGATGCCGGCTGCCTCGAGCTGCGACTGCCCGCACCTGGAGTGCGTTGGAGAGATCACTAAAGAGGAGCTCATCCAAAAGTCTCACgGCCAGTGCCAGGACTGCAGAGTCGGTGGGCCGAACCTCTGGGCCTGTCTGGAAAATGGCTGTGCTTATGTCGGATGCGGAGAGTCCCACGCCGACCACAGTACAGTCCACTCTCAGGAGACGCGGCACAACCTGACAGTGAATCTGACCACGCTGAGGGTTTGGTGTTACGCCTGTTCCAAGGAAGTCTTCCTGGACAGGAAGCTGGGCCCTGTTACCCCGCCCACTGGCACTGCCAAACCCATCTCACCTGTCCCGCTGCCTGGCCAGGATCCCGGAGTTCCAGGCAGCCCCACCGCTCTGAGAGTGCCACCAGCCGGAGTACCCGAGGATCTGGATATGGAGACCGAAGAAGAAGACGATCTGAGGACTAGAGGTCTGACCGGCCTGAAAAACATCGGCAACACCTGCTACATGAACGCAGCACTGCAGGCGCTGTCCAACTGtCCTCCGCTCACTCAGTTCTTCATAGACTGTGGTGGTCTGGTCCGAACAGACAAGAAGCCGGCACTGTGTAAAAGCTACCAGAAGCTGATTACAGACCTGTGGCACAAGAACAGGCCTTCCTATGTCATCCCAACAAACCTGTTCCAGGGCATCAAAGCTGTTAATCCGATGTTTCGAGGTTACTCCCAACAGGATTCTCAGGAGTTCCTACGTTGCCTGATGGACCAGCTGCACGAGGAGCTCAAGGAGCCGATAGAAGAACCCGAAGACCAGAGTCAGACTGCAGGAACGGACGAAGACGAGCCGAACGAGCCCGCCGAGCCTCACGAAGCTAACGAGGCTAACGAAGCCGAAACGCTCATCTCAGACGAGGAGAAAGCGAGCCGAGAGCGGCAGAGGGAGAAGAACCTCATCAACGAGCGGCACCGAGCCGACCTGGACAAGGACGAGGACACGGCGACCATCGTCAGCAGCCAGGGAGCCATCAAGCACAGCAAGGCCACGGACACTAATCCAGAGATCCAGATCAGCAGCAGTGGCCGGCCCCAGAGCCCGAGTGCCAGCGAGAACATCGGGTCCAAACTGTCCAGCAGCCCACCCAAATCCACCCCCATGTGGCCAAACCTCAACCCAGCTCACAAGAAAGTGAGCATGTTTGCGCCCCCGAAGAGCAAGCGGCAGAGGAAATACCGCAGCGTCATCTCCGACGTTTTCGACGGCACCATCGTCAGCTCGGTGCAGTGCCTGACCTGCGACCGGGTATCAGTGACCCTGGAGAACTTCCAGGACATTTCCCTGCCCATTCCCGGGAAAGAGGATCTAGCCAAGCTTCACTCGGCCACTCATCAGACGTCGCTGGTGAAGGCGGGTTCGTGCGGCGAGGCTTACGCTCCTCAGGGCTGGATCGCCTACGTCCTCGAGTACATCAAGAgCTGGTTCTGGGGCCCGGTGGTCACACTGCAGGACTGTCTCGCCGCCTTCTTCGCTCGAGACGAACTCAAAGgAGACAACATGTACAGCTGTGAAAAGTGCAAGAAgttgAGAAATGGAGTCAAGTTCTGCAAAGTTCAGAGTTTGCCAGAGATCTTATGCATTCACCTGAAGCGCTTCAGGCACGAGCTGATGTTCTCCACCAAGATCAACACTCACGTCTCTTTCCCACTGGACGGTTTGGACCTGCAGCCCTTCCTGGCCAAAGACAGCTCGGCCCAGACCACCACCTACGACCTGCTGTCCGTCATCTGTCACCACGGCACCGCCAGCAGTGGTCACTACGTGGCTTACTGCCGCAACGACCTGAACCAGATGTGGTACGAGTTTGACGACCAGAGCGTAACCGAAGTCTCCGAGTCCTGTGTTCAGAACGCCGAGGCCTATGTGCTCTTCTACAAGAAGAGCAGCGAGGAGGCGCAGAAAGAGAGGCGGCGAGTGACGGCTTTGTTCAACATGATGGAGCCGAGCCTGCTGCAGTTCTACGTCTCGCGCCAGTGGCTCAACAAGTTCCGGACGTTCGCCGAGCCCGGGCCCATCTCCAACCGCGACTTCCTGTGTGCACACGGAGGCGTGCCGCCCCACAAGGCTGCGTATATCGATGACCTCGTGGTCATGCTGCCCCAAAACGTCTGGGACCATCTGTACGGCAGGTATGGAGGCGGGCCAGCTGTCAACCATCTGTACGTCTGCCACACCTGCCAGCTGGAGATTGAGAAGCTGGAGAAACGGCGCAAGAGCGAGCTGGACATGTTCGTACGGCTGAACAAGGCGTTTCAGGAGGAGGAGGCCCCCGTGGTCATCTACTGCATCAGCATGCAGTGGTTCCGTGAATGGGAGGCTTTCGTCAAAGGCAAGGACAACGatcCTCCAGGACCTATCGACAACTCCAAGATCGCTGTGAATAAAAACGGCCACGTCACGCTCAAGCAAGGCGCCGATTCGGGTCAGATCTCCGAGGAGACGTGGAACTTCCTGCACTCGATCCACGGCGGCGGTCCTGTGGTGACGGTGCGACCCAGCGTGAGCCACCAGGATCCCGACGCCTCTCAGGCTGAGGAGAAGATCGAGGTGGAGACTCGCAGCTTATAGAGAAACAGGAAATCGTTCACTTTTGCACTTgcctttctctcacacactcttcattcCCTGCGTGCATTCCTTACAAGTAATAAGTTAATAAACGTTGTGAATTACGCTTCATGTTTGTATATACggcagttagttagttagttagttagttagttcgTTTAAATTGGACTGAAAATCAAATTTACACGTTTTCTCCCTTCCTCCTGTGTCGTCCTTCGGCCAGGACACATTTGTCATCTGACGTTTGCgtattttagtttaaaaattaGCTACAAAAGCACATATCAGACAACAAACATATCTTTGGTGATTGATGGAATTTTAGGGAACAGTTTCATTGTAtaaattgaatttttattttatttttttttttgatgaactATCCCTTTAAAACAGCGATAAAGTGATAATTCACACTGCTGGACacgtattaaataaaataatgcttaaGTATCAATTAGCAGCTGGACGACACCTTTCGGTGCTGCGTAATGAATTAAATtgctcacttcctgttcctgttcctgttcctgtgtgACCATTAGCAAACTAATAAAATGTGACTCTTATTGCTCCTTTAAAGCCAATTCTTACAGATCCTGTCGAGGATATGCCTGATGTTGTATATATATCTTATTCAGGTGCAGTCTAAGCTGAAGGAAAAGTGTCTTCGTGAACGACGTGTGCGATTACGAGGGGATCAAAAGCACTAAGAACCGTATTTTCCGGAATATGTGTAACCTCAGAGTTTAAGATGCTTAGAACACAAATTTGAATTTAGGTTTTGTCCCTTTAGTGTTGCCGTAACTTAGCGATTTTACTCCCTCTGTCCTAATAAAGACGTCGTTATGCATCAGCGTTTAATAACGAAGTCTTGTTCACTTTAGACGTAGATTTGTTTGACACTATAATAATTCTTATTATTGCTAACATGATGATCAGATTTCCAGCATTACAATCGTAGCATGCTAACAG

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0016477 cell migration biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0051298 centrosome duplication biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0007411 axon guidance biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005813 centrosome cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11848 USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86819 lncRNA downstream 96294 29053597 ~ 29054227 (-) True G73248
TU86836 lncRNA downstream 106551 29043760 ~ 29043970 (-) True G73264
XR_004577953.1 lncRNA downstream 121330 29013240 ~ 29029191 (-) False LOC113540203
TU86820 lncRNA upstream 16237 29188158 ~ 29189340 (-) True G73249
TU86821 lncRNA upstream 16695 29188616 ~ 29189340 (-) False G73249
TU86892 lncRNA upstream 41632 29213553 ~ 29215051 (-) True G73318
TU86893 lncRNA upstream 44349 29216270 ~ 29218158 (-) True G73319
TU86901 lncRNA upstream 101668 29273589 ~ 29320334 (-) True G73327
XM_026936482.2 mRNA downstream 3029 29131186 ~ 29147492 (-) False zzz3
XM_026936483.2 mRNA downstream 3162 29131186 ~ 29147359 (-) True zzz3
XM_026936498.2 mRNA downstream 73085 29055012 ~ 29077436 (-) True pigk
XM_034303525.1 mRNA downstream 232369 28913679 ~ 28918152 (-) True LOC113540041
XM_034303523.1 mRNA downstream 232372 28911613 ~ 28918149 (-) False LOC113540041
XM_034304142.1 mRNA upstream 128385 29300306 ~ 29322917 (-) False dipk2aa
XM_034304140.1 mRNA upstream 128385 29300306 ~ 29322917 (-) False dipk2aa
XM_034304141.1 mRNA upstream 128385 29300306 ~ 29322917 (-) True dipk2aa
XM_026936180.2 mRNA upstream 161198 29333119 ~ 29336703 (-) True chst2a
XM_034303445.1 mRNA upstream 187579 29359500 ~ 29371526 (-) True pcolce2a
XR_004577982.1 other downstream 265556 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 265556 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 268357 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 498096 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 913716 28236724 ~ 28236805 (-) True trnas-uga_2
XR_003404076.1 other upstream 351473 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 351802 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 352588 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 353068 29524989 ~ 29525061 (-) True LOC113540703
XR_003404065.2 other upstream 392681 29564602 ~ 29575727 (-) False LOC113540665

Expression Profile