RNA id: XM_026935815.2


Basic Information

Item Value
RNA id XM_026935815.2
length 2014
RNA type mRNA
GC content 0.42
exon number 5
gene id tmem179ba
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16321650 ~ 16326011 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaatTCGCCATCTGTTCTGGGTCTTGCTCATCCCTGTCCCgcggtgtgcatgtgtgtgcagaagtgtgtataagtgtgtatgtgtgtgtgtgtgtgtggagcgcGCGGTTCTTGTACTCGTGACTCGTGATGGCGCTGCCgcggctgctgctgctgttagaGCTCGCGCTTCACGCCTGCTGCTTCATCTGCGGAATCATCACCGCCgcctctgtcactctctctcagGGTGATTTTTCAGGGAAGTGTTTGCTGTACGGCTCTGTGCGCGTCAACATTTCAGTAATTGACGTCAGCTGGTCCAGCGCTCCTTCTCTCTGTTACTTTGTGTCAGGCATCTCTGTGTGCGTAGCTGTCTTCTGCTTCTCCACCACCCTCTACTGGGTATACACGAGCTGTGTGGATGGAGAGGTCAAAAGagagagaatatggATGACTATCTCGTTACTTGTAAGTGGagtcttcctcttcttcctcctggTGACGGGATGCATCCTGAAAGTGGGTCGAGACAAACTTTGTGAATCTGTGGTCAGAGCAGTACCCAGTATAACCAGGTGTGATGAGGCCCAGAGCATGACATGGAAAAGCCCTTTGATTGGGTCAAGTTTCTACTCCAAACTCCACAATGCTGAGaAGGCAGTGTGGGTGAATTTCTTCTGCTGGATAATAGTAGTTGTTCTGGTGGTGGTCCAGCGTAGATGGGGCTCTGAGTACAGCACTCGGGAAGTGGAGCCCGGAGCCAGTCCTTCTGAAACAGAACCCTTCTTCAAACGGCCAGGACACCccaactgaacacacacaagaTGGCACAGGCACTGTGGCATGCACACATTGAACACACAATGAGCCAATCACAGAttgagataaacacacacacacacacacagatgcaggcACAGTACTGGTTTTGGCTACCTCGGTCAGTGGTCGTGGTTTTGCTCCCCAGAGGTATGAGGCTTTGTTGCCATGGCTACTGACCAGCAATTGGCAGCAGTAGCTTGGCAGCTAAGAGagtgaggttgccagattggtctTACTGATTCATATTGATCTAAACGcaaattaaaatgcacaaatctgACTGGATTAATGAGTACACTTCCTTATGTAAATGGATAACTTTTATGTGACCTGCTGGCTTCAGTCTCTGATAAAAGCTTTGGGATGTGATAAAATTCCAGGAGTGTTCTTGTGAGGTAGTATTATAGTATAAGTAAATGGAAGATATAATGGAACAAATAAGTGCCTTGAGACTTAGATTATATTATAATGGTTTTACAGTGCTGAAACTTGAAAAGTTTATGGGTATCCTTTGTGTTAATAACACATTAGCTCCATCTGCTGTCAGTTTTTATCAGTTCTTATACCGAAAGTCCAGATGTTCAGCACAATTGTTATTTTTCCACTATATAGTTATGCTGTCGCAGAATGTACCTCTATGCTAAAGGAGTGTTCCTTGGTTTCAGATTAACAGGATGCTGTTAAGGTTAAtgtgaaaatttcatttttgtgaaatttgCATAATTGTGAAAAAGCACACAGTGTGCTGGTGGGGACATAAACTTATCCATGGGGTTATGATAAGACTTGCGTGCTGGTTGCCAAAACCATGTCACTGCCCATAGCACTAAATTAATCAAGTACAATGGCCTTCCTGCTTTTCCCACACATAAAAACAAGatgttttattggtttattaaCTTATAAGTTATATAGTCCTCCTTGTGATCGTTATTTTTTATCTGTCCAGTTGTATTCTGTGCCATTCTGAATATGTGAAAATTTTTTCTTACCTTTTTGATCTATGCAATTTATTGCAGACCAACATGTATGAGATATCATCTGGATATTGCCTTATTAGTTTTCcttcatgtattttttattaaatgaaaacaaaatgatttttatcAAACATAATTTTTATGTCTTGAAGCTGctttacatattttgtttatgtaaGTAGGCCGATATAGACATCTCAGATATAATCACTGAATAAAAGTAAACCAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77478 lncRNA downstream 20942 16299996 ~ 16300708 (-) True G65445
TU77456 lncRNA downstream 54104 16267236 ~ 16267546 (-) True G65423
TU77455 lncRNA downstream 57485 16262925 ~ 16264165 (-) True G65422
TU77449 lncRNA downstream 61352 16255951 ~ 16260298 (-) True G65416
XR_003404045.2 lncRNA downstream 125054 16193092 ~ 16196596 (-) True LOC113540579
TU77501 lncRNA upstream 17053 16343064 ~ 16353271 (-) True G65463
TU77520 lncRNA upstream 42130 16368141 ~ 16368495 (-) True G65475
TU77517 lncRNA upstream 43521 16369532 ~ 16373147 (-) True G65472
TU77538 lncRNA upstream 101190 16427201 ~ 16427407 (-) True G65491
TU77540 lncRNA upstream 103132 16429143 ~ 16429358 (-) True G65493
XM_026936696.2 mRNA downstream 90510 16207837 ~ 16231140 (-) False znf638
XM_026936695.2 mRNA downstream 90510 16207837 ~ 16231140 (-) True znf638
XM_026936100.2 mRNA downstream 130081 16158387 ~ 16191569 (-) True LOC113539957
XM_034303465.1 mRNA downstream 179679 16140800 ~ 16141971 (-) True zgc:194655
XM_026936353.2 mRNA downstream 196640 16120382 ~ 16125010 (-) True oxa1l
XM_026935806.2 mRNA upstream 1562 16327573 ~ 16332792 (-) True prox3
XM_026936975.2 mRNA upstream 10245 16336256 ~ 16342824 (-) True snx15
XM_026936586.2 mRNA upstream 93153 16419164 ~ 16426624 (-) False tnfsf12
XM_026936587.2 mRNA upstream 93153 16419164 ~ 16426623 (-) False tnfsf12
XM_026936588.2 mRNA upstream 105925 16431936 ~ 16439205 (-) True LOC113540241
XR_003404041.2 other downstream 249958 16055022 ~ 16071692 (-) False acox3
XR_004577994.1 other downstream 329765 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 417295 15879471 ~ 15904355 (-) False tbc1d19
trnap-ugg_2 other downstream 445752 15875827 ~ 15875898 (-) True trnap-ugg_2
trnae-cuc_13 other downstream 1586923 14734656 ~ 14734727 (-) True trnae-cuc_13
TU77497 other upstream 93299 16419310 ~ 16423164 (-) True tnfsf12
TU77801 other upstream 278097 16604108 ~ 16605717 (-) False bmp15
TU78232 other upstream 1074583 17400594 ~ 17402464 (-) True G66053
TU78241 other upstream 1113482 17439493 ~ 17444174 (-) False rnaseka
TU78578 other upstream 1268438 17594449 ~ 17634868 (-) True G66281

Expression Profile