RNA id: XM_026935846.2


Basic Information

Item Value
RNA id XM_026935846.2
length 9061
RNA type mRNA
GC content 0.44
exon number 39
gene id frem1a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18113433 ~ 18143631 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGCAGCATCTGGCCACGCCTCTTCATAAGCCCTCCGACTGCATGACTGCGCGTGCGGACATGGAGCTGTGCCAGATAACAGAGCAGCGCCATGCTACTCTGAGGGTGTGAGGAAGGTGAACCTGGATCTACTTACTTCTTAAAACATTGCCATGTGCCAACAAGCCCcaggaagagaaagaagcagATAATAGGCTGTATGTACATAAAGACTCCTTTCCTGAGACTCTGTACTTCCATGCACTCCTCCCTCTGGACTCTGTGGAGTGGGACAACATCTCTGATTCCCTCCCTTGTGCTCACACAGACTGCCTCCCtcttccctccctctgtctctgtgcaAGCTGCTCGAGGCTCTTTGCTCAATTAGGCAGTTGCTGTGCGAGGTAGAGGAGTGCTCTGGGGCAGTGGAGGGTTTTTGGAGATAGAGTTGCGGTTTGTGCATTAGATCTTCCCAGAACATGTGATAATatactgaaaatgtattaaGAGAAGACGGATATAAATCATTCAATTTGAAACAAAGCATCATAACAACGAAAAGGCATTCCATCCAACTGAAAAATATATGAGGAACTTTGAATTTACAAACCAAGAATGGTTTTTCAAAAAAGGACTCATATGTGGCCGTTTTGGTTTCTCCTTTTGCTGGGACTTTTGCACTTTGGCATTTGCTCCCTTGTGAAGACCAACCATGGCCTGCGGGTGAAGAGAGGCCAGTCAGCTTTCTTGCAGGAAGGAGATCTGCAATTCCACATACCCAGAGAGAAGGATGCCTGCAAGCTGGAAGTGGTTCTGAATGAACCTATAACCCAACGTGTTGGCACACTGTCCCCTCAGGTTTTTGACTGCCACTATTTGGCTGATGAGGTGAAATATACTCATAATGGCTGTCCTATTTTAAAAGAAGATATTGTCAAACTTCGATTGTACAgattcacagagacagagacatataGTGAACTGTTCTCACTCCATATTGAGATCATGGAACCTGATTGTAATGTTATAAAGTTGGGACCACAGACATTGCAAGTTCCAGAGTTCTATGGTCTTTCCAATATGCTTGATGGTAATGTGATGTCCTTCCACTATGATCATCGACCCAACATAGAGTGTACTATTAGGGTGATGACACCAGAATCTGGTCTACCTGGACATGGTCAGCTGGTCACTGGTGAACCTGACAAGCTAGAAGGGCCAAGAGGAGATGAACCAGACAGCTTTGTCTCAATTCGACAACAATTAGAAAACAAAGCCAGAGCCAAATGCAAGAGTGAAGACTGTTTGAAAGGACTAAAATTGGTGACGATTACAAAAGTGTCTTGCGAAGAATTCTTAATGATGGGCATTCGCTATCAGCATATTGATCCTCCATCACCTGATATTGATTACATTGCTATCAAACTGGACCTCACAGACACAAGGAGTGGGAGCATAATCCAGTCAGAGCAAGCCTGGATCCCCATTACCATTAAAGGTGCTGTAACCAACCAGCCCCCAAAGCCTGCCTTCATGTCCATGTTCATCCTGGAAGTGGATCAGTTCATCTTGACTCCACTGTCCACAGCCATCCTTGATGCAGAAGATGCTGAGACCCCAAAGAACAGGCTTGTGTTCAATATCACCAAGCCTCCCAGTGAGGGCTTCATCACTCATTTGTCTGATCACACCAAGCCCATATCATCCTTCACCTGGGTGGACCTCAATGAAATGCTTATCAGCTACCAGCCTCCCAATTCTAGCCATACACAACGCAGGAACTATGAGGTAGAGTTTGAAGTCCATGATTTCTACTTTGAGAAAAGTTCACCTATTATGGTACATGTGTCAGTCAGGACAGCAGACACAAATGCACCAAGAGTGTCATGGAACATGGGTCTCAGTCTCCTAGAAGGTCAGTCTCGGCCCATCACATGGGATCAGCTGCAAATTGTGGACAACGATGATCTAAAGGCTGTAAGAATCATCACCGTGGATGGCTTACAGCATGGAAGACTGACTGTCAGAGGTGGAAAAGGGTTCATGTTCACTGTAAGTGACATTAAGGCTGGAGTGGTGCGCTATTACCATGATGACAGCGATACCACCAAAGACTTTGTGGTCTTTCGGATCACTGATGGCCGCCACCAGACCAGACACAAGTTCCCCATCAACATCTTACCCAAGGATGACAGTCCACCATTCCTCATCACCAATATGGTCCTGGAACTCTCTGAGGGACAAACGGCTCTTCTTCGAGGTTCTATACTTCAAGCGTCAGATATGGACTCCAGTGATGACTACATCTTGTTCAACATCACTAAGCCTCCTCAAGCAGGGGAGATCATGAAGTTGCCAGGTCCAGGAATTACAGGTTATCCTGTGATGCGTTTTCTACAAAAGGATCTCTTTCATTCCATCATCTACTACAGGCACTTTGGCAATGAAGTATTTGATGACTCTTTTGAAGTGGTGTTATCTGACTTTCATGATCCTCCCAATCTCTCAGAGCCTCAGATCATTGTGATTCAAATTCAACCTATCCCAGATCAGCCACCTAAAGAGGCCCCAGGAGTAACTCGACATCTGATAGTCAAAGAGACAGATGTGGTATATTTAACCAAGCAGCAGTTGCACTTTGTTGATGTGGAGTCACCAGACAGTGAGCTTACCTACACGGTTACCACCCCACCTTTCTACACTACCACTTACGGGGGAACTGATGCAGGGCGGTTGTTCCTGGTTGACAGCATCCCAAAATTGGCTAAGGATCCCAATGCCCCCGTGCTTAGACTTTTCacacagCATGCTGTCAACTACATGAAAGTGGCTTATATGCCTTCTTTCCAAGACATTGGGCCTTATCCTCAGCATATTCAGCTTGTGCTGTCTGTGACAAGTGAGCAGGGCCGAACTACCACTGGAATCTGTTTCAACATTACAGTGCTGCCAGTAGACAACCAGTCCCCGGAGGTGCACATGAACCAGTTGATTGTGGATGAGGGGGGAGAATGCTGGGTCAGTGCAGATCACTTGCACCTGACTGATGTGGATTCTCTGGAGGACTCGCTACGTGTGGCACTGAAGAGAAGGCCTCAGCATGGGGACGTGTATCTGGATGGTGCACCCTTGAGTCAAGGCCAGACCTTCACCGTTAGAGACCTGAAAAGCCTTAAAGTTAGATACCACCATGATAGttcagagacagaggaagataACATTGAATGTATAGCCACAGATGGGGTGAATTCAGTTGACTTTGTTCTACATAttaagGTAACACTAGTCAATGATGAAATGCCAGCACTGGTACCAGGCTTGAAGACTGTTCTAGAGTGTGCAGAGGGACAGGAAGTTGTGATCACCATAGAGTACATCTATGCAACAGATGGTGATAGTGATGACAGCAAACTGACCTATCTGATTGCTCGCCAGCCGTATCATGGTGTAGTGCTAAAGAATGGTATAGTGGTAGACAGGTTCTTTCAAGAAGATATAGAAACCAGGATCATCAGCTACAAACATACAGGCCTGGAGGTTGGATTGCTCCCTCGTCATGACACCATCACATTTGTGATCTCTGATGAACAGACGGATCCAGTTCCTTCATGCTGCTTTGACAGACCTTCTCAGTTTAATGGGCGAACAAAACATCCCCAGGACTCCTTGCTAATCTATGACCTCAATATTACTGTTTATCCTGTGGACAACCAGCCACCATCCATTGTTATTGgTGAAGTGCTTCAGGTGGATGAGGGAGGCTCTGCTTCTATCACTGTAGCACATATAGGAGCCTCTGACCAGGACACTCCTCTGGAGGACTTGCAGCTTGTGTTGGTGACTACACCACAGTTTGGCTATATTGAGAACATTCTGCCTAGTCCAGGGTTTGAGAAGAGCAACATGGGAATCAGTATTGCCTCTTTTTCCTATAGGGATGTACTGAATGGACACATAAACTATGTGCAGTCCAGACACCAAAGGACTGAACCCACTGCTGACCAATTTATGCTATACATCTCTGATGACAAACACCAATCCTCTGCAATCCCCttctacatcatcatcaagcCAACAAATGACGAAAGCCCAGATTTCCTAGCCAGAAACATTAGTGTCCGAGAGGGAGACATGAAGGAGTTGGATGCCTCCATTATTAATGCTGTGGATTTAGATGTTCCCAGGGATAAGTTAACATTTCGCATCATCCAGCAGCCCCAACATGGGGCTATCATGGGCGGGCTTCATGGTAATGATGTAGCTCATTATAGAAGATCTATCCAGAATCATGGAACAGAGGTTCAGGTCCAAGTCTTCACCATGGAAGATCTCAGAAATGGTATGACACTGATGTATTTACATGATGACTCAGAGAGTGAGCAGGACAGCTTCATCATCCAGCTGTCTGATGGAAAGCACCAGCTCCAGAGGCACATATTGGTCAAAGTGACGCCTATCAATGATGAGAAGCCGTGTATCATTAGgaaCACTGGGATTGAGGTGGAACCAGGAGAAGCCAGACTTATTTCCAGTGCTGTCCTAAGTGCTTATGACAAAGACACTCCCTCCACTGACATCATCTATGTGTTTGAGAGTGTTCCCGTTCATGGCCTGCTTCAGATTAAGgcaggCCTGGACTGGAGGACACTGTCAACAGGAATGAACTGTTCCCAGGAAGCTGTGGATATGAACTTGCTGCGCTATGTACACACAGCTCAGCCTGGAGCTCACACACAAGACTTTTTCATCTTTCATCTACAGGACGGCAGGAATCGCTCCCCTGCACAACACTTCCACATTTCACTCAAGGAGCTAGAGAAAGGAGACATAGCGTTGTTTGTAAAGCCGGTGAAAGCTAGCCGTGGAGAGCATGTAGTGATCACTACAGACATGTTGCTTGCTGTAGATGGCACTGAAAAGCCAGAAGAGCTGCTCTATGTGATCACTGTGCCTCCAGCACATGGTCATATGGAGTACATCAAACACACTGGCATTCCCATACACTCCTTCAGCCAGCTGGACATAGTGGCTAATCTGGTGTGCTACGTCCATGACAACAGGGCTACTTCACCTAGAGAGACAGTGCAGTTTGTCATCAGTAATGGAAAATCCACACGTAATGGTACTCTGGAGATTCTGGTGGAGATGACCGATAGAGTTCTCCCTATGCTAGTGCAGAAGACTGGTCTGCAGGTTCCTCAGGGTTCCACCGTTACTATCACCACTGATAACCTGCACCTGTCTGACCCAGATACCCCACCCCATTCCCTGATCTTCATGCTGGTGCAGCCCCCACAGTATGGTCAGCTTATTGTGAAAGGTTTTCCCTTAGCTCCAGGGAGCAACTTCACACAGCAGAACCTACAGGACCTGGATGTTGCTTACAGACACTCAGGTGGAGCTTCTCAGATTGACCGCTTTACTTTCACTGCTGCTGATAGCACGACAAGAGGCTTCCTGGTGGGAGGGAAGGTGCAGACAGAGCCAGTCTTCTTTTCTATACAGattgAAACATTAGACCGGTCTGCTCCAAGCGTGATGGTGCTTGAGACTCTGTGGAAAGTGGAGCTTCTAAAAGATGGACGTTATGGAATCTTTATCTCATCCAGAGAATTAAAGGCTCAGGATTTGAATGGTGCAGATGAGAGCCTCATCTTCCACATACTCAGAGCCCCTTACTTTGGATACTTGGAGAATGTCACCAATGGTGCATTTGTGCGTCAGAGGTTCACTCAAAGGGATTTGAACAAGaagaatattttgtatataattaACCCTTCCCTGGAAGCCTTAAATGACAGTCTGGTGTTTGCAGTCTCTGACCCACTGGGCAACACTGGACCATCTCACAAATTAGAGTTCAGCTGGGCCAGTGTAGAGCTGACCAAGACagagtattgtgtgtgtgaaggcaaAGGaccactctctctcactgttcaGAGGAAAGGCAATATGCAAGATTCATCATATGTAACTCTCAAGGTAAAGGAGCTAACAGCAGCTATAGGAAAGGATTTCATATCAGCTCCCTCAACTCTGATTCAGTTTGATCCTGGTGTGGCCAGTCGGCAGTGGAAGGTGGAGCTTGTGCAGGATTTTCTGGAGGAGGCTGAAGAGATGTTTGAGGTGACACTGGATTCTCCTGTAGGTGCAATACAGAGAGGAAACAACAAAGCTGTCATTACAATAATGGACAACAAGAATGGACTGTGTGCTGACCCCAGAGGGCCAGATCTTCAGGGTAAGGAGCTCCAAGCAGGGCCCTACCCCAAACATGGCTCCATCCAGGTAGAGACTTTACCTATCACCCTGGGAGTTGGGCCAGAGATTGCCAGAGGCGATAACTTGCCTCAAGTTATTACTCCCGTCTCCAAGAAAAGACTAAGAACCAATAGCAATGGAAAGTCTATTCGACCCTCTTCAATCATTCGGAGTGGATCTGATGTTCTTTACACTTATCATGGGATAATGTCACTGACGGTGGAGGACGAAACTACGGCCTTTAACTCTGGGAAGAAGGCTCAAGTGCAGGTAACCAGTAGAGGGCAGCAGCGTTCCCTCCCAGCCAAAAGCCCAACCCACCTTACAGCACTTCCTACAAATAACCGAAGAGGGACAGCTCCTCAGAATAGTTTCTCTAGGCCTGAGTCTAAGGCCTGCACTCCAGAGCTAGCAGGTTTTCTCCATTTTAACGCAAGCTTAGGCCAGCTCCTGCAGTGCAATGGGATATCCTGGAAACCCTGGGCTGCTACAGATGAGGCTGTGAATGCACAGAAGTGTCCACAGGGGTGGACTTACCATAGCCACCACTGCTATCTGCTGAGCACAGAGCGAAAAGCTACATGGAACGATGCTGCCAGGGCCTGTCGAGAGAGCTTCCAAGGCAGCCTTGTCAGTGTGCTATCAAAAGCAGACATGGATTGGCTCTGGGACTACAGTGAGAGGAAGCCCTTCTGGATTGGTCTGAATGACCGGGCGAGTAAAGGCTGGTGGGAATGGGTGGATGGAGAGCCGGTTACTTACACCAACTGGAGGCGCGGTCCACCCCGAACTAGAATCAAGAGCAACAAGAAGTGTGTTTTGGTATGGAGGAAGACAAAATGGCAAATCCGAGACTGTAAGACTGGAAAGGGACACCGTTTTGTGTGCTATGTGAAAACATGAGCTGCTACTGATTACCAAATAATTTATACCCTGTCTTAAGATTACTTGTTTACTTCATGATACGAGACCATCCAATATATGACACTGCTTATGGTGcatgatgaactggaactcaATGGtcaagtattattattaaagtataaCTATATTTAGAGAGGCAGTGTATACTATAATGACTGTATGTGATAAGAACATCAGATGAACAAATGTTTGATAGTGGATGCAGACATTAGTACCTCAACTGTGTgtgcaatgttttattttaccaTCAGAACTAAATCAATGCACGTTGAAACTGAAATGACTTATGTAATCAAAAACAACACTgcaatactgtaaatgtaaacccTCCTAGATACCTAATTAtttcatgtatgtatgtatgtatgtacagtgagggaaaatttggacacttttgtttttcttatttaatatctTTCCAGCCAATGGCAATGTTGTTTATAATGATGCAATGACCTGGtgcaatttgccaaaaaacaTTTCTGGCAGCATTTTATCTAGAACTtgatttatatttgtgtaacctttacatatatgttttaatacagtgtctgaatattttactccctatcaattttattttaaaacacatattttgtttttgcttatgaatacatagtTTTTTGTTCCTATTTATAAGTATAATGTCAAATGGCATTAAGTTTGTAAatctgaagtggatatatgcactgaaagtatattaaataacaaaaaagtgtctgaatacttatttcccctcactgtatgtgtattatatacCATAGGACTAATAATATAAGAGACATCACTATTTGCCTGTAGCTGTACTACTGAAACTGCTCTCGCCGATAAGATCACAGGCAAACAATACACTCCCTACTCACTGAATCATAAGTGCTATCAAACTGTTTTAAAGCCATTAGCACACTGAACCAGTATCACGATCAAAtgaaaatcatttattaaacatttgttgGTCAGTAGAAATGAAACATGACGACATACGaaagaaattacaaataaaatcagctattttcagtattttcagtTCTGTTTACATACAAAATAAGGCACTGTTTTATTAAGTGTCTGTCtagtaaatgtacaaaatgtcatactttaacaaaaataaaatataaaaaaatgcacattgtgtCTACGAcataaaaaagactaaataaaactatacagtgTACCCAtatattttggagaaaattaAGTCATGTACAagcaaatatttttgtcatacgCCAACTTCCAGAACAGACGACAACCTAAGGGTCCAGTCCACTGTCAAAAATGTGTGACCTTGAATTTATCAATGTAAGGAGATTAGCATGtcaaagtgcaaaaaaatatacagcAAAAACAATCATGACCGCCAGGTAGAGTTTAATCAGTTTCATTTGTTGGAAAAACAGATCTGTGTGCTTTAGTACATAATTCAGTGTTTCTCCTGCATGTCTTCTGATTGTAATAACTGCCAGGCACATTAAAGAAAATGCAGTTTAGTGCATCTAGGCTTAATGGAGCCACCATCTGAACATAGCGAGGAAGGTAGAAATAAGAGCCAAACCATTTCAACTACATCCAAGAGAATAGACATCTATGTAAACTCAGTAGGGGGAAATAATCATTAAGCAGGATTGGCTTtatcttaaaaaacaaacaaataaaaacaaacccaacaactttcaaaaatatgaaaacattttaaatcatttcccATTCCATCGAAGACTATCATACATAGCAGAAGTAAAACATCTTCCATACATGTGTTATTATCCAGATGCACTGGAAACATCCCTAAACACAGTGATGCAAGCAGAGAAGTTCATCCATGCCTTGGCTCTTATAGTAGTTTCCTACATTCTGAGATCCACAATAGGTCACATTAAAATATAccgactg

Function

GO:

id name namespace
GO:0033334 fin morphogenesis biological_process
GO:0007154 cell communication biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K23380 FREM1_2; FRAS1-related extracelluar matrix protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78778 lncRNA upstream 1529 18111685 ~ 18111915 (+) True G66426
TU78533 lncRNA upstream 16861 18091588 ~ 18096583 (+) True G66263
TU78493 lncRNA upstream 121197 17990435 ~ 17992247 (+) True G66237
TU78438 lncRNA upstream 138085 17973998 ~ 17975359 (+) True G66186
TU78403 lncRNA upstream 194347 17911594 ~ 17919097 (+) False G66169
TU78810 lncRNA downstream 33603 18177234 ~ 18177642 (+) True G66452
TU79006 lncRNA downstream 238325 18381956 ~ 18382162 (+) True G66637
TU79026 lncRNA downstream 286931 18430562 ~ 18431136 (+) True G66654
TU79045 lncRNA downstream 347741 18491372 ~ 18491581 (+) True G66670
TU79140 lncRNA downstream 525411 18669042 ~ 18669250 (+) True G66754
XM_026936697.2 mRNA upstream 31014 18049289 ~ 18082430 (+) True rap1gds1
XM_026936698.2 mRNA upstream 31014 18049289 ~ 18082430 (+) False rap1gds1
XM_026936699.2 mRNA upstream 31014 18049290 ~ 18082430 (+) False rap1gds1
XM_026936733.2 mRNA upstream 85393 18021293 ~ 18028051 (+) False spata6l
XM_034304071.1 mRNA downstream 77993 18221624 ~ 18243797 (+) True sec24d
XM_026936118.2 mRNA downstream 282727 18426358 ~ 18430359 (+) True gba3
XM_026936168.2 mRNA downstream 705534 18849165 ~ 18851580 (+) True sod3a
XM_034303649.1 mRNA downstream 807416 18951047 ~ 18954000 (+) True ppp1r15a
XM_034303737.1 mRNA downstream 1027068 19170699 ~ 19327377 (+) False LOC113540597
XR_003403977.2 other upstream 102482 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 348910 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 493365 17609704 ~ 17620079 (+) True LOC113539940
XR_003404112.1 other upstream 1351569 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 1351797 16761572 ~ 16761647 (+) True LOC113540744
TU78855 other downstream 53681 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 712825 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1684680 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 1685188 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 1957394 20101025 ~ 20101098 (+) True trnar-ucu_2

Expression Profile