RNA id: XM_026935851.2


Basic Information

Item Value
RNA id XM_026935851.2
length 2441
RNA type mRNA
GC content 0.47
exon number 7
gene id fastkd3
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21480615 ~ 21485813 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttaaaatgtcgaATTCATCTAAATGTGGCTGGAGACCTATCTAGGGTTTTTAGCTAAGATGGGTCATTTGTAACTGCTAATTGGATAACATTAAGCTCGGTAGACACATCCACTTCCGCCTGCACTAGACCCTAGTGAAGGATGTCATAACGCTCTTTCATGGCTCTGAAAGTGGTGCGGAGGCTGCACATGCTGAGGCAAGCGGCTCGTCCCCATCTGCTCTCTCCCACcactctgaatgtgtgtgtcagacaaCATGTGTGCGCTCCAGGCTTTCTCACCTTGTCTCAGGGCTGCCGTCATTCTCTCTCTGGGAAAGAAGGAAAGCTGCAAAAAAGGCAGCTGTGCATCACAACCCGCGAGCCTCTGTTTCTTGTAGCCGGATCCATCCGGCTTCCCCGTGACCCCTCTACAGGAGGAGCTCTCACCTCTCTGTTGCATGGCCTGAGCTCTGATGAGGAACGTGCCTTCAAAGATCGCCTTTTCTCCTGCATGACTTCCCAAAAAGTGCTTCACCTTGTGCACTCCACGCCACGTCTCTCAAGTGCAGGTGCTGTTGCTGTTCTCAACCGACTGGCTGATCTGGAGCAGGATGGAGCCAGAGGACTTAGGGAGCCTGAGGTGCTGCTGTCTGATCCGGCTTTGAATAAGATGTGTCTGAGGTTACAGGAAGAAGCTGGTGAGCTAGAAGACGAGGTGGTGGTAAGAGCTCTGCTGGGTTGTACGCGTCTTTATCTAGACCCACAAAGTCGCTTGGTGATGAGATTGATGTCCGAGAGCCAGGTACGGCTAAACACAGGCCACTTGAGCATTGAGACTCTCTGTGAGTTAGTGCAAGCACTTTTCTCAGTAGATGGGCCTGATGGTGGCATCCTACAGCAGGCTATGAAGCAGATCCAGAACAAAGATCCAGCTCATTGGAATCCAAGTGAACTGACCTCTGTCTATAAAATGCTAGCTGCAGGGTTGAATGAGGGTGGACGTTACCAGGAAttgctgaatgaaatgaacacTCGAGCACTCAGGCTTGCCCCAAGAATGGACCCTGTAACAATCAGCGAAACATTAGGAGCTCTTGTGAAGCTGGGCCAAACTCAGGCACTCCCACTGGTGATTGCTTTGTGCAAACAGACTGTGCGTCATGTGCCAAACTTTGCGGATACAGATCTGTCGATTGTACTGTCTGCACTTATGCACTATGGACACAGCGATCACTTTCTCATTGAGGCTCTGGAACGCCATGTACCCAAAATAGCCTTTACAGCTCATCCTGAGACAGTAACCAGGGTAATGCAATATTTTGGGCGGCGGCGCATTTTTTCTCCCCCCGTGTTTGATGCAGTGGCCGAAAGCTTTGTGTACAGGGCAGATGAGTACACCACGGAACAGATATCTCGGCAGATAGTGGCACTGGGAGTAGTGGGATATTTACCTCAGGAGGCTGGTCGACTTTTCCGAAAGGTGGAGTCTGTCTTGAATGCACGTTTTTCGCACTTCCAGCCTCGAACTCTGCTTGAGTTGCTGCACGCTTGCACTCTTCTACAGAGATTTCCACTCAACTTTGTCTCAAAGGTCTTCAGCCCATTCTTCCTACAGCAGCTTCAGGAGGGCAGTGTAATGGATCAGGTGGTGCTGGCTCAGCTTACGCAGCTCTACATGACAATGAAACTGGAATGTCCATTCTATCGGGGTCCACAATTTTTACCCAAGCTGCGAGTGAAGTCATTTCTGTCTCCTGGCTCTTCCTTGGAAAGCATGGTGGACGCTCATCTCTATAATGGGGTGAAGAATGGGCTAGTGGATTTGCTAGGGGATCGAACTTACTTTGCTTCCAGAGTCCTTACACCATACTGTTACACACTTGATGTGGAGATAAAACTGGATGAAGACGGCTATGTCTTGCCTGCCAGCCATGTTGAGGAAGTATATAAAAGAATTGCTGTTTGTATTGATGGGCCAAAGCGATTTGCTGCTAATGCCAGACAGCTTCTGGGGAAGGAAGCTATCAAACAACGACACCTAAAGATTCTGGGATATGAAGTTGTTCAGattCCCTATTACGAGTTTGAAAACCTTAAGGACAAGGTCAACACAGTCGAGTACCTGCACAAGAAGATTTTCCCTCACACATACCGACTCAGCTGGTGATCACTAGTTTCCACATGCAGCAGGTTTCATGCCAGCCTCATTCCCTCGAACATATGCAGACTACTCTGATACTAGACTCACAAAACAGCCTTTGTTCACGCCCTGTCAAATATATTCAgaagataaacagatagatcAGCATTACATGTTGAGGAAGCTAATGTCTTGTACTGCTGTTTTTTAATGATGTCCTTGTTTATAGTCtctaatgtatttttttaaactgagagTTTCAAGTACtatataaattatttgtttaaataaaggaaaatgaccatggtgcttttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81365 lncRNA downstream 4839 21474587 ~ 21475776 (-) True G68577
TU81291 lncRNA downstream 7583 21472819 ~ 21473032 (-) True G68520
TU81290 lncRNA downstream 8776 21471632 ~ 21471839 (-) True G68519
TU81263 lncRNA downstream 72408 21407111 ~ 21408207 (-) True G68495
TU81222 lncRNA downstream 151365 21326076 ~ 21329250 (-) False G68462
TU81377 lncRNA upstream 11266 21496932 ~ 21501433 (-) True G68585
TU81559 lncRNA upstream 342607 21828273 ~ 21828833 (-) True G68740
TU81560 lncRNA upstream 344410 21830076 ~ 21830642 (-) True G68741
TU81562 lncRNA upstream 349556 21835222 ~ 21835426 (-) True G68743
TU81563 lncRNA upstream 350104 21835770 ~ 21835995 (-) True G68744
XM_026936203.2 mRNA downstream 50035 21427185 ~ 21430580 (-) True LOC113540027
XM_026936006.2 mRNA downstream 62787 21413861 ~ 21417828 (-) True mrpl15
XM_026937164.2 mRNA downstream 79347 21399555 ~ 21401268 (-) True sox32
XM_026936104.2 mRNA downstream 100656 21376395 ~ 21379959 (-) True sox17
XM_034304123.1 mRNA downstream 109605 21363925 ~ 21371010 (-) False LOC113539989
XM_026936692.2 mRNA upstream 2521 21488187 ~ 21492336 (-) True myl12.1
XM_026935855.2 mRNA upstream 68860 21554526 ~ 21580543 (-) True emilin2b
XM_026936632.2 mRNA upstream 96556 21582222 ~ 21623632 (-) True smchd1
XM_026936085.2 mRNA upstream 244529 21730195 ~ 21735741 (-) False adcyap1a
XM_034303776.1 mRNA upstream 244953 21730619 ~ 21735758 (-) True adcyap1a
trnaa-ugc other downstream 62376 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578106.1 other downstream 109605 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other downstream 109605 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other downstream 109611 21368250 ~ 21371004 (-) False LOC113539989
TU81225 other downstream 151365 21326046 ~ 21329250 (-) False G68462
TU81579 other upstream 448860 21934526 ~ 21935169 (-) True G68760
TU82055 other upstream 1146519 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 1808285 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 1994299 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 1994386 23480052 ~ 23480566 (-) False LOC117597073

Expression Profile