RNA id: XM_034303297.1


Basic Information

Item Value
RNA id XM_034303297.1
length 3191
RNA type mRNA
GC content 0.39
exon number 5
gene id rgs20
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22679189 ~ 22701151 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGAGAGTTACCAAGCACCAAGAAGCTTTGAAAATGACActgaatgtgaaaataaaggaaacagaTCTGAGATTCCTATATCCTTTCAGCCCATGGGATCAGAGAGGATGGAGATGCGAAAGAGGCAGATGTCGGGGCAGCAGGAGCTGGTGGCGGGAGGCACAACGACGGGAACAGCGCCAGCCCAGCACGAGCAGGCTGGTCAGGGCGAGCGTGCCTCTAATGCCTGCTGTTTctgctggtgctgctgctgtAGCTGCTCATGTCTCACTGTTAGGAATGAAGACAGGGAGGAGAGGAACCGGAAAGCCTCGCACGACGTCAAAGCTGAGGACCCGGGTGACTGCGAGGAGAGTCCAAAGCCCACTATGGATGAAGTGTGCTCATGGGGGCAATCCTTTGACAAGTTAATGCGTTGCCCTGCTGGACGTTGCGCCTTCCGGCAATTTCTACGTACCGAGTTCAGTGAGGAGAACATGCTCTTCTGGCTAGCCTGTGAAGAGTTCAGCAAGGAGACCAATAAGAGTGTCATCAAGGAGAAGGCACGCCTCATATATGAGGACTACATTTCCATCCTCTCACCCAAAGAgGTGAGTCTGGATTCACGCGTTCGGGAGGTAATAAACAGGAACATGCTGGAGCCCACGTCTCACACGTTTGATGATGCCCAGCTCCAGAtttacacattaatgcaaaGAGACTCATACCCACGCTTCATGAACTCCCCTGTCTACAAAAACCTACTCAAGAGCGTCTCGGAGCAATGTCCAGAATCCTAAATCTCTGTGATCCCACTCGAATTCTCCCTTCCCCTTCTTCTTTTTGGGTTCCTTTTTCATTATGTGGAGTTTGTTTAAAAGGACCTTTCTGTGGGTCCTCCCAGGGATTTTACCACATTAGAGATCTGTACCTGAACAAGACACTCAGGTCTCCAGGTCACTGGATTTTAAAACAATGTCTCAAATCTCCTGAGGGCTCAATACCACAAGTACTGCTACAAAACAACATAGCAAGAAGCTCCAAAGGATTATCAgtgcattttcatatttttaagaaaaaatatctattttatttgtgttttgaattgttttaaaTTACCTTTTTGTATTTACTTTAAAAGATGATGTGATGCCCAGTATGGGCTATTTACAGTATACACATTAGATATATTTATGAACTTGTAGTATATTTCCTCTTGTCTTAGAATATTTCAAGAAAAGGGAATCATGGGTAACAGGACATGCCCAGTTCTAGACACTGCATATGAGAATCAAAGATCAAGTCAAGGCAAAACAGCAGCTTTACTCAAAGAAAACTGTGTGCCATTACCTGTCATAATAGCTTAGCATGTCCAGGTGGAAAAGATCTTTCTTTCGTATTTATGATAgggctcttttttctcttttttcaaatCACTATTAAAGGCAGAGAGTGAAACCCTAAATTTCTGGTAAAAGACATGATACAATCTGTGGATCACAAATCTTAAATGCCCAAATGTCATGTTGATTAACTTAATGCCAAaaggtttttttctctttgatgGCTTGAAAATTGGTGGCTATTATATTACGCTCTACTACAATGCAGCCTGTAGGTAAATTGACAGCGACACCATATTTCTTGTACTATATAGTTTGGCTCTGTACCCAGAAAATAAGatcatttttatcctttttacaCAGTCTTTGTATTCCAGACTTTACTGTAGCAGTTGTTATAAACCCTCTGACATCAAGTCTGAATAATTCTTTCGTTAACGCAGTCTTTACACAAGCTCTCTTGTGTACGAATTAATGCTGCAACAACATAGAGCTGGTGAATAAATAACTGCGCAACCAATTGTCTAATTACTTGTAGTTTCCTAAAACAAACTGTAATTCTTCTGTGGTTTACCCAGTGTGGATACTCATTTGTTTCTTGACTTTAAGCTCATAatcaatgttttaatttaaatccaGTATTACCTGGTAAAAACCTGTTAGTGTCCAGTTACCTCCAGACCTCACATGATGGCTAATCTTTACCTATATCCAAAAAATGTGCATACTAGAAGCAGGCTCAAGATCTTATGTAAActtaagtattaaaatcatcAAAATTACTTATAACCGTCTTGAGATGAATATAACCATTTTAATGTGAAGGTATTTTACTATTGTATCAAATATCTTTAGGTTTAGTTCAGCATTTCCCAATCCTTTGTCCTCGAGTCCCTCTGCGctgtatattttttacattttcccaGTTTCTAATGCATTTCACTCAACTCCCTAGCTACTTAACAAACCCTCCGTGAGGTAAACGCATTTACTAAAATATGTACTACAGGGACACTTCGAGACCAGGATTTGGGAACACTGGCTTCCCAGATTCAGACTAAATGGATAAGTATTTAGGACTCTTATTTGTAGGTGACACCAAAGTAGCCAAGTCCAGGTAAACTGTGTTATTACTAGCTTACTCTCTGAAAGCACTGATTAGAATCAGTGGCCAAgttattgttgttgtcgttgttgttttatttttttttaaatagttttgtaaatgattttgttGCCTGACTCATGTCGCTCAAAGACAAGATCCTCACACGGGGAAGTGCCTTGACATTCAGTTGTGTGACATCTCTTTTATGGCAATAGTTGAATCGAACTCTTGCCGCAGAAATAGACTCTGGACCTTTGATCAATTTCTGATGTGATTTGTCCTGATGTGACTTCGGAAATTAATTCTTGTaattcatttgtgtgttttctttttttgttttaaatccatttttttttccatcactgaAGTCACGACATTTGAAGGAAGAGGTTCACAAGATTAGGACAATTCATAAAGTGTGATTGATCCGAGTCCAGGCATGCTTCTGCCAGTATGTATTACATGGGGGTACTTCTGCTCATTATTTACTCGACATGTGCAATCTGAGCTGATGGATTCACCACATAGATCAACCTCAATCTAAGCCAATGGTTTTGAAGTGATACTgcctacatttttatttctttttgttctgttgGTGTTGTGAAAAGTACGCAAGAGTGTTATTTTCCAATCGGTTTACAAAAAgagtatacatttttaaatgaataatatctGAATGTTTACAgtaatctgtttctgttttactcgactgaggaaaaaaaaatatctgtggGCATTTGAAATCTTTAAGATGAAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82087 lncRNA downstream 1271 22677376 ~ 22677918 (-) True G69203
TU82062 lncRNA downstream 26743 22649939 ~ 22652446 (-) True G69183
TU82063 lncRNA downstream 28645 22649939 ~ 22650544 (-) False G69183
TU82054 lncRNA downstream 47627 22629615 ~ 22631562 (-) True LOC113540019
TU82009 lncRNA downstream 159923 22515704 ~ 22519266 (-) True G69136
TU82121 lncRNA upstream 70235 22771386 ~ 22772012 (-) True G69233
TU82140 lncRNA upstream 102235 22803386 ~ 22805908 (-) True G69248
TU82146 lncRNA upstream 107755 22808906 ~ 22809249 (-) True G69254
TU82235 lncRNA upstream 353363 23054514 ~ 23055383 (-) True G69320
XR_004578004.1 lncRNA upstream 571011 23272162 ~ 23273614 (-) True LOC117597081
XM_034303845.1 mRNA downstream 16707 22653613 ~ 22662482 (-) True LOC113540005
XM_034303443.1 mRNA downstream 43101 22631245 ~ 22636088 (-) False LOC113540019
XM_026936185.2 mRNA downstream 43246 22631245 ~ 22635943 (-) False LOC113540019
XM_026936186.2 mRNA downstream 43246 22631245 ~ 22635943 (-) False LOC113540019
XM_034303779.1 mRNA downstream 79133 22545958 ~ 22600056 (-) False ctnnd2b
XM_026936105.2 mRNA upstream 136876 22838027 ~ 22851158 (-) True emilin2a
XM_026935864.2 mRNA upstream 285510 22986661 ~ 22990616 (-) True adcyap1b
XM_026935865.2 mRNA upstream 285510 22986661 ~ 22990612 (-) False adcyap1b
XM_026937238.2 mRNA upstream 339957 23041108 ~ 23050113 (-) True clul1
XM_026936974.2 mRNA upstream 448975 23150126 ~ 23174379 (-) True mrc1b
TU82055 other downstream 43437 22632185 ~ 22635752 (-) False LOC113540019
TU81579 other downstream 744020 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 1260950 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578104.1 other downstream 1308179 21368250 ~ 21371010 (-) True LOC113539989
XR_004578082.1 other upstream 592800 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 778814 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 778901 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 792228 23493379 ~ 23493919 (-) True G69592
LOC117597074 other upstream 793884 23495035 ~ 23495897 (-) True LOC117597074

Expression Profile