RNA id: XM_034303635.1


Basic Information

Item Value
RNA id XM_034303635.1
length 1913
RNA type mRNA
GC content 0.47
exon number 17
gene id parp2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26319287 ~ 26329275 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCCGGACTCCAATATGACGCCACCGCTTCGAGCAATGAGACGAACACGGAGCAGCAAAAACAAACCCAAGGTGAAGGAAGAGCCGGAGACAGagtgggCTTGGCAGGATGATGATGGACAGTGGGTATTGTACCCCTCGGCAGTGTGTGCTGAGATCAACGCTGCGTTCCAGGCCGGGAGgaagtgtgtgtctctgtcacTCTGCCCAGGATATGACCTGGACCTGGTGAAGATGACACAGACCAACACTGTGACTAAATACTGCCGTAAAATCCACAAGTCAGaagtggtGAAGATGATGGTAATGAAGGGGAAAGCTCCAGTTGATGCAGAGTGTAAAGCCAAACTGGGGAAGGCTCATGTCTACAGTGAGGGTAAAGACGTGTATGATGTCATGCTAAACCAGACCAACCTGCAGTTTAACAATAATAAGTACTACCTAATCCAGCTGCTCCAGGACGACCAGGCCCAGGTCTACAGCGTGTGGATGAGGTGGGGGCGAGTGGGAAAAGTCGGACAGAACAGTTTGGTGTCATGTGGTGCAGATCTCGCTAAAGCCAAAGATGTCTTTAAGAAAAAGTTCTTTGATAAGACTAAAAACGAGTGGACACAACGAGCAAACTTTGAGAAAGTTCCTGGAAAATATGACATGGTGTTCATGGACTACAGCTTGAATGACAaaGAGGAGAGCATGGCAGTGATGTCCACTCCTTCTGAGATGAAACCCTCACAGCTAGATGACAGACTTCAGGCTCTCATGGAGCTGATCTGTGACATTAAAGCCATGGAGGAGTGTGTGCTCGAGATGAAGTTCGACACTAAAAAAGCTCCTCtcggGAAGCTGACGGTGGAGCAGATCCGAGCAGGATACTCCTCTCTGAAGAGAATTGAACTgtgtctgaaaaagaaaagcagcaatAAAGAGCTTCTGGATGCCTGCAATCAGTTTTACACTCGCATACCACACGACTTCGGTTTGCGAACTCCTCCCATTATCTGCACGGAGGAGGAGCTGAAGGAGAAAATCGCTCTGCTTGAggctctgAGTGATATAGAGATAGCAGTGAAGATGGTACAGTCTGAATCAATGAGTGATGAAAATCCTCTGGATAAACACTATAGGTCTCTGAAGTGTCTCCTCCAGCCTcttgaatcacacacacacgagtaccagGTGATTGTGAAATATCTGCAGTCGACTCACGCGGTCACTCATAATGATTACACCATGACTGTGCTGGACATCTTCAGTGTAGAGCgagacagtgagaaagacaACTTCCTGTCTCACCTGCACAACAGGACGTTGCTGTGGCATGGTTCTCGTCTGTCTAACTGGGTCGGGATTCTCAGTCAGGGTCTCCGAGTCGCACCTCCTGAAGCTCCAGTCACAGGCTACATGTTTGGTAAAGGGATTTATTTTGCCGACATGTCGTCTAAGAGCGCTAACTACTGTTTCTCCAGTCCGAAGAACAACGTGGGATTACTTCTACTGAGCGAGGTCGCTCTCGGAAACTGTAACGAGCTTCTGGATGCTAATTACGATGCTGACAAACTGCCTTCTGGGAAACACAGCATTAAAGGCCTGGGCCAGACTGCCCCTGACCCCAAAAACTCCACCACACTGGACGGTGTGATGGTTCCCCTGGGTCCCGGAGTGAGAACTGGTGTGGGACACAGTGGAGGATACACACTCCTATATAACGAGTTTGTGGTGTATAATCCTGCTCAGATACGCATGAAATACCTGCTGAAGATCCAGTTTAACTACTCAGCAATGtggtgagagagtgtgtgtgtgtgtgtagagaatgTAGAGAAACCAGAACAGATTTTTTAATCTCAGTATAGTTTTGTAGGTTTTggatgaaattaaacattttttttttaaataaacattttccagcTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84635 lncRNA downstream 29371 26260689 ~ 26289916 (-) True LOC117597203
XR_004578102.1 lncRNA downstream 31076 26260721 ~ 26288211 (-) False LOC117597203
TU84576 lncRNA downstream 90096 26228879 ~ 26229191 (-) True G71386
TU84558 lncRNA downstream 107605 26211443 ~ 26211682 (-) True G71376
TU84552 lncRNA downstream 162436 26156163 ~ 26156851 (-) True G71370
TU84665 lncRNA upstream 40505 26368686 ~ 26382522 (-) True G71456
TU84679 lncRNA upstream 74358 26402539 ~ 26412348 (-) True G71469
TU84680 lncRNA upstream 79794 26407975 ~ 26415752 (-) True G71470
TU84681 lncRNA upstream 80994 26409175 ~ 26414494 (-) True G71471
TU84686 lncRNA upstream 98077 26426258 ~ 26427374 (-) True G71474
XM_034303577.1 mRNA downstream 346282 25970634 ~ 25973005 (-) True LOC117597050
XM_026937257.2 mRNA downstream 386526 25904440 ~ 25932761 (-) True tnn
XM_026937049.2 mRNA downstream 688087 25561334 ~ 25631200 (-) True pappa2
XM_026937050.2 mRNA downstream 688087 25580417 ~ 25631200 (-) False pappa2
XM_034303716.1 mRNA downstream 894111 25423546 ~ 25425176 (-) True LOC117597083
XM_026935881.2 mRNA upstream 10554 26338735 ~ 26367975 (-) True sdr39u1
XM_034303641.1 mRNA upstream 10554 26338735 ~ 26367949 (-) False sdr39u1
XM_034303640.1 mRNA upstream 10554 26338735 ~ 26367127 (-) False sdr39u1
XM_034303642.1 mRNA upstream 10554 26338735 ~ 26366336 (-) False sdr39u1
XM_034303639.1 mRNA upstream 43740 26371921 ~ 26376408 (-) True ltb4r2b
TU83344 other downstream 2014361 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2282433 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 2787271 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 2801617 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 2802928 23515699 ~ 23516359 (-) True LOC113540114
TU84653 other upstream 45577 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 143899 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 208921 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 768421 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 875602 27203783 ~ 27204186 (-) True G71909

Expression Profile