Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034303640.1 |
| length | 1303 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 5 |
| gene id | sdr39u1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 26338735 ~ 26367975 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0044237 | cellular metabolic process | biological_process |
| GO:0050662 | obsolete coenzyme binding | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU84635 | lncRNA | downstream | 48819 | 26260689 ~ 26289916 (-) | True | LOC117597203 |
| XR_004578102.1 | lncRNA | downstream | 50524 | 26260721 ~ 26288211 (-) | False | LOC117597203 |
| TU84576 | lncRNA | downstream | 109544 | 26228879 ~ 26229191 (-) | True | G71386 |
| TU84558 | lncRNA | downstream | 127053 | 26211443 ~ 26211682 (-) | True | G71376 |
| TU84552 | lncRNA | downstream | 181884 | 26156163 ~ 26156851 (-) | True | G71370 |
| TU84665 | lncRNA | upstream | 1559 | 26368686 ~ 26382522 (-) | True | G71456 |
| TU84679 | lncRNA | upstream | 35412 | 26402539 ~ 26412348 (-) | True | G71469 |
| TU84680 | lncRNA | upstream | 40848 | 26407975 ~ 26415752 (-) | True | G71470 |
| TU84681 | lncRNA | upstream | 42048 | 26409175 ~ 26414494 (-) | True | G71471 |
| TU84686 | lncRNA | upstream | 59131 | 26426258 ~ 26427374 (-) | True | G71474 |
| XM_026935873.2 | mRNA | downstream | 9460 | 26319287 ~ 26329275 (-) | True | parp2 |
| XM_034303634.1 | mRNA | downstream | 9980 | 26319287 ~ 26328755 (-) | False | parp2 |
| XM_026935872.2 | mRNA | downstream | 10003 | 26319287 ~ 26328732 (-) | False | parp2 |
| XM_034303635.1 | mRNA | downstream | 10554 | 26319287 ~ 26328181 (-) | False | parp2 |
| XM_034303633.1 | mRNA | downstream | 10554 | 26319287 ~ 26328181 (-) | False | parp2 |
| XM_034303639.1 | mRNA | upstream | 4794 | 26371921 ~ 26376408 (-) | True | ltb4r2b |
| XM_026935883.2 | mRNA | upstream | 79331 | 26446458 ~ 26452831 (-) | True | si:dkeyp-66d1.7 |
| XM_026935989.2 | mRNA | upstream | 211667 | 26578794 ~ 26595990 (-) | False | sppl2 |
| XM_026935988.2 | mRNA | upstream | 211668 | 26578795 ~ 26595990 (-) | True | sppl2 |
| XM_026936649.2 | mRNA | upstream | 305620 | 26672747 ~ 26678848 (-) | True | ccnl1b |
| TU83344 | other | downstream | 2033809 | 24304374 ~ 24304926 (-) | True | G70255 |
| XR_003404116.1 | other | downstream | 2301881 | 24036718 ~ 24036854 (-) | True | LOC113540746 |
| LOC117597117 | other | downstream | 2806719 | 23531238 ~ 23532016 (-) | True | LOC117597117 |
| LOC113540013 | other | downstream | 2821065 | 23516930 ~ 23517670 (-) | True | LOC113540013 |
| LOC113540114 | other | downstream | 2822376 | 23515699 ~ 23516359 (-) | True | LOC113540114 |
| TU84653 | other | upstream | 6631 | 26373758 ~ 26376088 (-) | False | ltb4r2b |
| TU84853 | other | upstream | 104953 | 26472080 ~ 26551030 (-) | False | G71596 |
| TU84852 | other | upstream | 169975 | 26537102 ~ 26551030 (-) | False | G71596 |
| TU85159 | other | upstream | 729475 | 27096602 ~ 27100858 (-) | True | G71832 |
| TU85245 | other | upstream | 836656 | 27203783 ~ 27204186 (-) | True | G71909 |
