RNA id: XM_026935927.2


Basic Information

Item Value
RNA id XM_026935927.2
length 3096
RNA type mRNA
GC content 0.53
exon number 18
gene id fxr2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12227421 ~ 12242773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTCACTCGGACGGCGCGCGTGCGAGGGGAGGTCGGGCAACGGGGCTGAGAGGAGTTGCCGGGCGATAGGAGGATTTGAAGCTAGCTGTACGACGCTTTGAGGCGATTCGTAATTACGCCAtaactcacactcacactggcCCGTAAACATAAGCAGTAAGACTTACTTGCTGTCTTACTTAGCTAGTAGCCCGGCAACCGAGGGAGGAGGTGTTCGTGAGAGATAATTAGCGACCATTAGCTGTTTGCTAACATCGCCTGAGACATTAGCCGACAGCCTGCATCCTGACCCGAGCAGCTAGCTGCATTAGCCGGACCGGCGCGGCTCCTCTGCCCAGACAACACAACCCCTCTCCCTCCACACCGAAACGCTGGAAATCCGCAAGCGGCCGGAGACGGGCGAAGCGCCGGCGAAGCTGGGGCTGTTAGCGGAGCCGCACAGTGGAGGAGGACCCGCGGAGAGGCACAGCGGCGGGGACGCAGCGGCCGCCATGGACGGGCTGCCGGTGGAGGTGCGCGGCTCCAACGGGGCCTTCTACAAGGCGTTCATCAAAGATGTCCATGAAGACTCCCTCACGATAGTTTTTGAGAACAActGGCAACCAGAGAGACAGCTGCCATTCAGCGATGTGAGGTTGCCACCCCCATCCGACTACCACAAGGACATCGGCGAAGGAGAGGAAGTGGAGGTGTACTCTCGAGCGAACGAACAGGAACCTTGCGGCTGGTGGCTGGCGAGGGTGAGGATGATGAAGGGCGAGTTCTATGTGATCGAGTATGCTGCGTGTGATGCCACATACAACGAAATTGTCACATCAGAAAGAATCCGGCCTGTCAACCCCAACAGCCCTTCAACTCGCAACTCCTTCTACAAAACCACCATTGCTGTGCCCGTGGACCTCAGAGAAATCTGTTTAACTGACAACATCCACAAAGACTTCAGGAAAGCAGTCGGAGCCAACTGCGTCTTCTACAACACTTCATCACATGAACTGGTTGTACTGTCCACGAACGACTCCACAGTGAAGCGTGCCTCCCTTCTGAGTGACATGCACTTCCGCAGCATTCGCACCAAGCTCTTTCTCATGTCCCGCAACGAGGAGGCCACCAAACACCTGGagacgAGTAAACAGCTGGCATCAGCTTATCAGGAGGAGGTACGGGTGCGTGAGGATCTGATGGGTTTGGCCATCGGCTCCCACGGTGCCAACATCCAGCAGGCTCGCAAGGTTCCTGGGGTTACTGCCATTGAGCTTGAGGAGGAGAGCTGCACCTTCAGGATCTATGGAGAGACCCCAGAAGCTGTGAAACAGGCTAGAGTATATCTGGAGTTTAAAGAAGACTCCTTCCAGGTACCCAGGAATCTTGTAGGCAAAGTTATTGGGAAAAGTGGCAAAATCATCCAGGAAATTGTGGATAAGTCTGGTGTGGTGCGTGTTCGGATCGAAGGCGACAACGACAAAAAGCTGCCCAGAGAGGAGGGTATGGTTCCTTTCATCTTTGTAGGAACCAAAGAAAACATCAGTAATGCCCAAGCTTTGCTGGAGTACCATGTGGCCTACCTGCAGGAGGTGGAACAGTTACGTCTGGAGCGGGtgcagattgatgagcagcttCGTCAGATCGGTGTTGGTTACCGTGCAGCCCCAAACCGCACAGGTGCACCTGGAGCCAGTGATCGTGAGAGGGGATACCAGACTGATGAGAGCAGCAACTCTCTACAGACCTCCCGCACGTACGGCGGACGAGGCCGCGGGCGCAAGTCCAACAACGCATACTCTGGTTATGGAACAAACTCCGAGATGTCCAATGCATCTGAGTCGGAGGATCTGGCTGAGCGGGATCCTAGGCCCCGGGGAGTGGGAGGTGAGGAGAGGGGCTCCCGGAGAGGAGGCCGTGGCCGAGGATCCAGCACTGGAAGAGGCCGTGGAGGCCCAGGATCCCGCAGCTCGAACACAATCAGCTCAGTGCTAAAGGACCCTGACAGTAACCCCTACTCTCTGCTGGAGGGTGAAGGTGATCTGGGCGGAGACACTGATGCCAGCGAGAGCATGGGTGGCAGTGACCGCCGTAGACGTTCCCGCCGTCGCCGCAATGACCAGGAGCCCAGTGTGATTGACGCCGCCAATGAGTCAGATGGCCAGGCAGCTGCTAGTGAGAATGGGCTGGAAGATGAAAGCAAACCCCAGAGGCGCAACAGAAGCCGCCGTCGCCGCAATCGTGCCACCCGACCCGAGGGGGGCTCTGCCAGCCGTGACAGACAGCCAGTTACCGTGGCCGACTTCATCTCTCGTGCAGAATCTCAGAGCCGACAGAACCTTCCagtgaagaaagaagaaatgcaaCATGCCTCCCAGCCTAAGGAGAATGGGACTAGTGTGAAGAAGGAAGAGCATACCCCGTCCAAGCGTTCCCCTAGCAATGGTGTGGCATCATCTGGGGAGGCTCTGACCCTGGTGAACGGTGTTTCCTAAATGGAAAATGCAAAACGTCAGCTCACCACTCAAGACCATTGTCTAGAGCAAGACACTACAGCGATCTGTCCCTGCTTGCATTTACGTAAACCTTTAAACAGACGAGTGAAAATTGACTAAAAATCTTGAATTCATGAGATCAAGGagaaaaagatataaaaaaaaaaaatgacaaacgcATCTACTTAAACACTTTAACGGTGTATGTTTATCCTATCTATCAGTACTTAGTGCTTATGTAAGAGAAGCTTGCCAAAAAAGAGCTGGTGGATATGCTTCGAAAATCTGACGTAACTGAACACAGGACGTGactatatgtttttatttttggagagacggttttcttttttgtttgtcacTGTTGTCGtcgttttgtttgtttttcttcactggTGTGGGATTGGTCACATTCCCAAACAGATGCATCTCTGAAACAGTGTTAGAGGTGAGGGGAGGAGCTAGCCAAGAGATTGGGGGATGTGGGCGGAGCCTCGCATGTGACTGGCAGGTGAGGCTAAGGTACTCTAAGATTAAggttgtgtgtgtagggggaAAGAAAAGACATTGTGccttgaatttgaaaaaaaaaaaacttgagcatttttgtttttgtttgtggaa

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K15516 FMR; fragile X mental retardation protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74852 lncRNA downstream 104411 12067332 ~ 12123010 (-) True G63174
TU74721 lncRNA downstream 223102 12004007 ~ 12004319 (-) True G63062
TU74717 lncRNA downstream 254474 11972711 ~ 11972947 (-) True G63058
TU74670 lncRNA downstream 260525 11936771 ~ 11966896 (-) False htr2cl1
TU74690 lncRNA downstream 329320 11897845 ~ 11898101 (-) True G63031
TU74905 lncRNA upstream 29599 12272372 ~ 12277612 (-) False LOC113539775
TU74923 lncRNA upstream 82687 12325460 ~ 12325671 (-) True G63219
TU74974 lncRNA upstream 111619 12354392 ~ 12355772 (-) True G63267
TU75090 lncRNA upstream 242101 12484874 ~ 12489553 (-) False tmem256
TU75226 lncRNA upstream 424668 12667441 ~ 12670500 (-) True G63502
XM_026935932.2 mRNA downstream 5482 12212987 ~ 12221939 (-) True ponzr6
XM_026935931.2 mRNA downstream 5984 12212987 ~ 12221437 (-) False ponzr6
XM_026935930.2 mRNA downstream 7142 12212987 ~ 12220279 (-) False ponzr6
XM_026936297.2 mRNA downstream 28069 12195517 ~ 12199352 (-) True rbm4.3
XM_026936296.2 mRNA downstream 32738 12190822 ~ 12194683 (-) False LOC113540082
XM_026935929.2 mRNA upstream 4189 12246962 ~ 12249754 (-) True si:dkey-165a24.9
XM_034303416.1 mRNA upstream 10472 12253245 ~ 12256515 (-) True ugt5g1
XM_034303417.1 mRNA upstream 10472 12253245 ~ 12255102 (-) False ugt5g1
XM_026936083.2 mRNA upstream 17963 12260736 ~ 12263489 (-) True LOC113539944
XM_026936202.2 mRNA upstream 21208 12263981 ~ 12265953 (-) True ponzr4
TU74378 other downstream 692408 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 1012999 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 1014487 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 1018588 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 1045108 11177711 ~ 11182313 (-) False mrpl52
TU74889 other upstream 4501 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 29445 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 29599 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 29599 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 961500 13204273 ~ 13204462 (-) True LOC113540725

Expression Profile