RNA id: XM_026936012.2


Basic Information

Item Value
RNA id XM_026936012.2
length 1224
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC113539907
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14041951 ~ 14054035 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGCACAGACCACATGACCAGCGCGTCCCTAATGCATTTAGCCAACAGCAGTTAGCTACTCAACTACCTTGAGAGTGAAGGAATTATTCCTCTGCGCTTTGTGCGGGATTAAGTCTTTTTGGTGGATTTTGACGGACCAGAGAGAACGCCATGCCAGaGCCGACAGATCTGAACGGGCCTGATCTAGCAAAGACGCTGGGGGGTGGGGCTCCAGGGAAAGACGGAAAAGACTCCGTAACCAATGGGCATGCAGAGGGAGAAGTCAACCCTTTTGCAGAGTACATGTGGATGGAAAATGAGGAAGAATACAACCGACAGGTAGAGGAGGAGCTGTTGGAGCAAGAGTTTCTGGAGCGCTGTTTCCAGGAAATGTTGGATGAAGAGGATCAGGATTGGTTTATTCCAGCGAGAGATCTTCCCCCAGGGATGGGACAGATTCAGCAGCAGTTTAACGGTCTGTCCGTCAGCGACAGCAACAGCAACACAGAGGAGATTGTGcGCAAGAGCAGCTTAAACCCCGAAGCCAAGGAGTTCGTCCCAGGAGTGAAATACTAGGGATCATCCTCACCCTCTGGAGTGGagccctctcacacacacatacagagacttTTTTTGGCTGGAATTGACACGGCCATGTATACGCTCTCATAAATATGTACACACAGCTGTGAGGGGCTGGAGGAGGAGGGTGAGgggttttttggggggggggagggagggaggagggttTATCtataagctttttatttttccatttgttacatgTAAACAAGGGCAGGGAATTTAGACGCAGCCTCTAGGAGGTGCCATCGCGACCTAACATTGTACTCAAAACAGAGccgttttatttctttctattgATAAGCCGAGAAGACAGATCACCCCAGCTCTCACTTAGAAGTCCGTGCCTGattatgtatttactttctccttgcctgaatttttttttttttttttaaacaggggAGGTTATGTCTGGCTGGGATAATCATGCCCCATAACTGTGGGTGTGGAGGGACAGTTTGGGGTGTGACTGGATGTAAAGTGGTTCACTGGATAATGGGCCAGTTTGAGTAGAATGGCAAGAAAAAGCTGTGGaggttttcacatgaaaacattatttgattttttgaGTAGAAATTCTTACATGCAAGATTGCAGTTATTTGAAACAAAAcgaagaaaaaaagtaaataaatgtaaaaaatgttggTATTTTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76186 lncRNA downstream 663 14040666 ~ 14041288 (-) True G64291
TU76201 lncRNA downstream 25001 14016595 ~ 14016950 (-) True G64305
TU76191 lncRNA downstream 42268 13998735 ~ 13999683 (-) True G64296
TU76189 lncRNA downstream 45552 13992571 ~ 13996399 (-) True G64294
TU76141 lncRNA downstream 130131 13902924 ~ 13911820 (-) False G64252
TU76336 lncRNA upstream 124539 14178574 ~ 14230828 (-) True G64434
TU76343 lncRNA upstream 196576 14250611 ~ 14253763 (-) True G64440
TU76369 lncRNA upstream 241459 14295494 ~ 14295699 (-) True G64461
XR_004578094.1 lncRNA upstream 568001 14622036 ~ 14632753 (-) True LOC117597192
TU76798 lncRNA upstream 807889 14861924 ~ 14862199 (-) True G64860
XM_026936736.2 mRNA downstream 8911 14018458 ~ 14033040 (-) True dok1b
XM_026936919.2 mRNA downstream 74040 13912683 ~ 13967911 (-) True sema4f
XM_026936327.2 mRNA downstream 244506 13747239 ~ 13797445 (-) False col4a5
XM_026936326.2 mRNA downstream 244506 13747239 ~ 13797445 (-) True col4a5
XM_034303949.1 mRNA downstream 244506 13753798 ~ 13797445 (-) False col4a5
XM_026936443.2 mRNA upstream 25670 14079705 ~ 14086981 (-) True cct7
XM_034303617.1 mRNA upstream 103401 14157436 ~ 14220288 (-) False plcb3
XM_034303616.1 mRNA upstream 103401 14157436 ~ 14220286 (-) True plcb3
XM_026936270.2 mRNA upstream 103401 14157436 ~ 14220283 (-) False plcb3
XM_026936435.2 mRNA upstream 244862 14298897 ~ 14503829 (-) True pcxb
XR_004578131.1 other downstream 132594 13909167 ~ 13909357 (-) True LOC113540747
XR_003404068.1 other downstream 133951 13907837 ~ 13908000 (-) True LOC113540694
XR_003404087.1 other downstream 137930 13903831 ~ 13904021 (-) True LOC113540713
XR_003404098.1 other downstream 837489 13204273 ~ 13204462 (-) True LOC113540725
TU74901 other downstream 1764282 12272372 ~ 12277669 (-) False LOC113539775
TU76338 other upstream 178774 14232809 ~ 14243681 (-) True G64436
trnae-cuc_13 other upstream 680621 14734656 ~ 14734727 (-) True trnae-cuc_13
trnap-ugg_2 other upstream 1821792 15875827 ~ 15875898 (-) True trnap-ugg_2
XR_004578098.1 other upstream 1825436 15879471 ~ 15904355 (-) False tbc1d19
XR_004577994.1 other upstream 1919544 15973579 ~ 15991885 (-) False smim20

Expression Profile