RNA id: XM_026936030.2


Basic Information

Item Value
RNA id XM_026936030.2
length 2588
RNA type mRNA
GC content 0.47
exon number 15
gene id alox12
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17426669 ~ 17500896 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTTCATGAAAAGGTGCTAAATCGCATGACTATAGAGACAATGGACTGATTAATGTCATAGGTGGAGAAtgcagtttacaccctgccctaAGACcatgctgattggagcaaacactttggggtcagcccagaGAGAAACGGTTAAAACCctctgacacaaaggaaactggAAGTTCTCGTCAATCAACAGCTTCAGGAGACTTTGTCGTCCATTGATATCAAGAGAGACAACGACGCAAGGAGGGAATCCCCATCTAAAGCAATGCAAACGCAAATGGAGTACAAAGTGACCGTGGCTACAGGCACCTTAGAGTTCTCAGGTACTACTAACTATGTGTATGTGACTCTGGTGGGGGAGAacggagagagtgagaggacgCTGCTGGACAAACCAGGCCTGGATCTGTGTAGAGGCGCAGTTGATGAATACATAGTCCAGAGCTCGACTCCTCTGGGTCGTGTGCTCCTGGTACGCTTGGAGAAGCAGAAGTACTTTGTGGAAGATCACTGGTTTTGCAGTTATGTGAAAGTCACACCACCAGAaggggaaaacacacaaaccttCCCCTGCTACCGCTGGTTAGTGGGGGATATTAAAATAGAAGTCCGCGATGGCACAGCTAAAAAACTAGGTGATGAGATCTTGCCTCAGGAGCTGGCTCATAGAAAGGCACAGctggaggagagacagaaaacctTCCGATGGCAAACCTGGGCTCCAGGAATTCCCAAATGCATAGATGCCAAATCACAGGCAGACCTACCCCAGGATGTTCGCTTTGCCAATGAGAAGCACTGTGACTTTGAAACATCACTTCATTACGCGATTTTGCATCTGTCTCTGAAGCAGCTGGTCATTTCATTTGGGAGGTCGTGGGAGGATCTGGATGatttcaaacaaataatttGGAAATTAGGGAGTCCCATTGCTGAATACACTATGGATCACTGGAAAGAGGACTGGTTTTTTGGCCATCAGTTCCTGAATGGGTTAAATCCACGGATGATCCAGAGGTGCAGGAAACTACCCTCCAACTTCCCTGTCACTGGAGACAAGGTGCAGGCCTTCTTAAGCCCCAACACCACCCTGGATAAAGAGCTCAAGGCTGGGAATGTATACCTTGTTGACTATGCTATAATGGATGGCATCCCTGAGAATGTTATCAGAGAGAAGAAGCAGCATATATCAGCTCCTTTGTGTTTACTATATGAACATCCAGACAGTGGCCTCATTCCCATCGCCATACAGcTTGAACAGAATCCTAGTAAGGACACACCCATCTTCCTCCCTAATGATCCGCCTCTGGCTTGGTTACTGGCTAAAATGTGGGTCCGTCATGCTGAATTTCAGGTCTCTGAGGTGCTGTCGCACCTGCTGCGAACTCACCTTATAGCGGAGGTGTTCTGTGTGGCCACACTGCGTCACCTCCCTGCAGTCCACCCTATATACAAGCTGCTCACTCCTCATCTGAAGTACACTCTGGAGATAAATTGCCGTGCACGCACACAGCTTATCTCTCATGATGGCATCTTCAAACAGGTGGTGTCCACAGGTGGTGACGGGCTGCTGGTGCTGTCTCAAAGGGAGTATAAGGTCCTGACCTACCGCTCTCTCCAACCCCGTTGCGACTTCACAGACCGTGGCGTTACTAAACTCAATAAATACTTCTACAGAGAGCACAGCCTGATGCTCTGGGACGCTATTGAGAAGTTTGTCTCCAGCATAGTGTCTCTATATTATGGAAGTGACAGTGAAGTAGTGCAGGATTCAGAACTGCAGGCGTGGATTAAGGATGTGGTTGAGGAAGGCTTTGCAAATATCCCCTACTTTGGGCTGCCTAATGAACTAAAGAATAAACAGGAGCTGATCACACTTTTGAGTGTGGTAATCTTCACCAGCACTGCACAACATGCAGCAGTCAACAATGGACAGTTTGACTTTTGTTCGTGGGTGCCCAACACACCTTGCAGTATGCGCCAGCCTCCACCCACAGACAAGGACAGTGTCACTATGGAGTTGATCATGAATACACTCCCGGATGTCAGCCAGTCATGTGTGGAGATGGCAATCACATGGCTTTTATCAAGAGCTCAGCCAGACGCAATACCTCTGGCACAGTATGAGGAACAGTACTTCACTGAGCTGGCAGCCCAAAAGATGATCGACAACTTCAGGCAGGACCTGAAGGACATCGAGGTGGACATTCTGAAGCAGAATAAGGGTCTTGAACCACCGTATCTCTATCTGTGCCCTAGCCAAATAGAGAACAGCATTACCATATAGAGAGGCTTGAGAGAAATTCTGCAATCTCTGATGATGTATTTCAAACAAGCTTCTCAAAATGTCCCTTTCAAAATGTCTATAGAACAATACACTCCTAGGTTACAGAATCTTATTGGTGATTGTTGTAAatctacactcactgtccactttattaggatcacctgtacattcatgcggTTCGCTAATCAGTGACTCAGgtggcagtagcacaatgcaaaaaccttcaattaatgttcacatcaaacatgagaatggggataaagtgtgatctcagtgactttaaccgtggcattgTTGTTGGTAC

Function

GO: NA

KEGG:

id description
K00458 ALOX12; arachidonate 12-lipoxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577991.1 lncRNA upstream 2501 17453446 ~ 17484922 (+) False LOC117597048
XR_004577992.1 lncRNA upstream 2501 17457745 ~ 17484922 (+) True LOC117597048
TU78090 lncRNA upstream 47051 17431077 ~ 17440372 (+) True G65934
TU78075 lncRNA upstream 83544 17402559 ~ 17403879 (+) True G65927
TU78076 lncRNA upstream 83568 17402559 ~ 17403855 (+) False G65927
TU78323 lncRNA downstream 76208 17577104 ~ 17578946 (+) True G66124
TU78331 lncRNA downstream 92736 17593632 ~ 17634867 (+) False G66128
TU78335 lncRNA downstream 92736 17593632 ~ 17634867 (+) False G66128
TU78342 lncRNA downstream 92736 17593632 ~ 17634867 (+) False G66128
TU78336 lncRNA downstream 92858 17593754 ~ 17634867 (+) False G66128
XM_034303560.1 mRNA upstream 49152 17426694 ~ 17438271 (+) False alox12
XM_026936020.2 mRNA upstream 68121 17405353 ~ 17419302 (+) True pelp1
XM_026936053.2 mRNA upstream 86035 17351919 ~ 17401388 (+) False arrb2b
XM_026936025.2 mRNA upstream 157877 17308623 ~ 17329546 (+) False mtmr1a
XM_034303569.1 mRNA downstream 7529 17508425 ~ 17520166 (+) False si:dkey-6n21.12
XM_026936070.2 mRNA downstream 12616 17513512 ~ 17520166 (+) True si:dkey-6n21.12
XM_026936048.2 mRNA downstream 19380 17520276 ~ 17523339 (+) True si:dkey-6n21.13
XM_034303563.1 mRNA downstream 72694 17573590 ~ 17586296 (+) True LOC113539911
XM_034303564.1 mRNA downstream 103411 17604307 ~ 17609478 (+) True LOC113539941
XR_003404112.1 other upstream 725548 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 725776 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 726085 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 726316 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 726604 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 108808 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 263565 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 499262 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 612548 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 696416 18197312 ~ 18208564 (+) True G66492

Expression Profile