RNA id: XM_034303560.1


Basic Information

Item Value
RNA id XM_034303560.1
length 2201
RNA type mRNA
GC content 0.48
exon number 15
gene id alox12
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17426669 ~ 17500896 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggtgagagtgagagtgggGGGAAAACTCAGTTTGCAGAAGTCAGCTATCAGATAGCAGTGCACTGAGACAGACCTACAAATACCACACAAACTGTGCAAAAGCCAGTGAAAAGAAGAAGTGGAGAGAGACTAAAGGAAACCTCAAGTCTTCACAAACAAGGCTTACTAGATGGAGTACAAGGTGACTGTGGCTACAGGCACCTTAGAGTACTCGGGTACTAATAACTATGTGTATGTGACTCTGGTGGGGGAGAacggagagagtgagaggacgCTGCTGGACAATCCAGGCCTGGATCTGTGTAGAGGCGCAGTTGATGAATACATAGTCCGGAGCTCGACTCCTCTGGGTCGTGTGCTCCTGGTACGCTTGGAGAAGCAGAAGTACTTTGTGGAAGATAACTGGTTTTGCAGTTATGTGAAAGTCACACCACCAGAaggggaaaacacacaaaccttCCCCTGCTACCGCTGGTTAGTGGGGGATATTAAAATAGAAGTCCGCGATGGCACAGCTAAGAAACTATGTGATGAGATCTTGCCTCAGGAGCTGGCTCATAGAAAGGCACAGctggaggagagacagaaaacctTCCGATGGCAAACCTGGGCTCCAGGAATTCCCAAATGCGTAGACGCCAAATCACAGGCAGACCTACCCCAGGATGTTCGCTTTGCCAATGAGAAGCGCTGTGACTTTGAAAGATCACTTCAATATGCGCTTTTGGAGCTGTCTCTGAAGAAGCTGATTATCTGGTTTGGGAGGTCATGGGAGGATCTGGatgattttaaacaaatattttggaAATTACGGAGTCCCATTGCTGAATACACTATGGAACACTGGAAAGAAGACTGGTTTTTCGGCTATCAGTTCATGAATGGGTCAAATCCACGGATGATCCAGAGGTGCAGGAAACTACCCTCCAACTTCCCTGTCACTGGAGACATGGTGCAGGCCTTCTTAAGCCCCAACACCACCCTGGATAAAGAGCTCAAGGCTGGGAATGTATACCTTGTTGACTATGCTATAATGGATGGCGTCCCTGAGAATGTTATCAGAGGGATGAAGCAACATTTAGCAGCTCCTTTGTGTTTACTATATGAACATCCAGACAGTGGCCTCATTCCCATCGCCATACAGcTTGAACAGAATCCTAATAAGGACACACCCATCTTCCTCCCTAATGATCCGCCTCTGGCTTGGTTACTGTCTAAAATGTGGGTCCGTCATGCTGAATTTCAGGTCTTCCAGGTGCTGTCGCACCTGCTGCGAACTCACCTTATAGCGGAGGTGTTCTGTGTGGCCACACTGCGTCACCTCCCTGCAGTCCACCCTATATACAAGCTGCTCACTCCTCATCTGAAGTACACTCTGGAGATAAACTGCCGTGCACGTGCAGAGCTCATCTCTCAAAATGGCATCTTCAAAAGGGTGGTGTCCACAGGTGGTGACGGGCTGCTGGTGCTGTCTCAAAGGGAGTATAAGGTCCTGACCTACCGCTCTCTCCAACCCCGTTGCGACTTCACAGACCGTGGCGTTACTAAACTCAATAAATACTTCTACAGAGAGCACAGCCTGATGCTCTGGGACGCCACTGAGAAGTTTGTCTCCAGCATAGTGTCTCTATATTATGGAAGTGACAGTGAAGTAGTGCAGGATTCAGAACTGCAGGCGTGGATTAAGGATGTGGTTGAGGAAGGCTTTGTAAACGTCCCCCACTTTGGGCTGCCTAATGAACTAAAGAATAAACAGGAGCTGATCACACTTTTGAGTGTGGTAATCTTCACCAGCACTGCACAACATGCAGCAACCAACAACGGACAGTTTGACTTTTGTTCGTGGGTGCCCAACACGCCTTGCACCATGCGCCAGCCTCCACCCACAGACAAGGACAGTGTCACTATGGAGTTGATCATGAACACGCTCCCAGatatcagccagtcatgtgtgGAGATGGCAATCACATGGCATTTAGGAAGAGCTCAGCCAGACGCAATACCTCTGGCACAGTATGAGGAACAGTATTTCACTGAGCCGGCAGCCCAAAAGATGATCAGTAACTTCAGGCAGGATCTGAAGGACATTGAGGAGGACATTCTGAAGCAGAATAAGGGTCTTGAACCACCGTATCTCTATCTGTGCCCTAGCCGAATAGAGAACAGCATTACCATATAGAGAGGCTTGAGAAAAATTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78075 lncRNA upstream 22815 17402559 ~ 17403879 (+) True G65927
TU78076 lncRNA upstream 22839 17402559 ~ 17403855 (+) False G65927
TU78081 lncRNA upstream 33896 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA upstream 54555 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA upstream 67125 17358486 ~ 17359569 (+) True G65939
XR_004577991.1 lncRNA downstream 15175 17453446 ~ 17484922 (+) False LOC117597048
XR_004577992.1 lncRNA downstream 19474 17457745 ~ 17484922 (+) True LOC117597048
TU78323 lncRNA downstream 138833 17577104 ~ 17578946 (+) True G66124
TU78331 lncRNA downstream 155361 17593632 ~ 17634867 (+) False G66128
TU78335 lncRNA downstream 155361 17593632 ~ 17634867 (+) False G66128
XM_026936020.2 mRNA upstream 7392 17405353 ~ 17419302 (+) True pelp1
XM_026936053.2 mRNA upstream 25306 17351919 ~ 17401388 (+) False arrb2b
XM_026936025.2 mRNA upstream 97148 17308623 ~ 17329546 (+) False mtmr1a
XM_026936030.2 mRNA downstream 49152 17487423 ~ 17500896 (+) True alox12
XM_034303569.1 mRNA downstream 70154 17508425 ~ 17520166 (+) False si:dkey-6n21.12
XM_026936070.2 mRNA downstream 75241 17513512 ~ 17520166 (+) True si:dkey-6n21.12
XM_026936048.2 mRNA downstream 82005 17520276 ~ 17523339 (+) True si:dkey-6n21.13
XM_034303563.1 mRNA downstream 135319 17573590 ~ 17586296 (+) True LOC113539911
XR_003404112.1 other upstream 664819 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 665047 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 665356 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 665587 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 665875 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 171433 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 326190 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 561887 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 675173 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 759041 18197312 ~ 18208564 (+) True G66492

Expression Profile