RNA id: XM_026936038.2


Basic Information

Item Value
RNA id XM_026936038.2
length 4256
RNA type mRNA
GC content 0.46
exon number 14
gene id mtm1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17279486 ~ 17307870 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGTCACATGACTCGGGCAGAGCGCTTCCTGCGGCGGTGCtaaacagtctggccatttcAACAGCGGACAATTGCACTTATCGGGCATCCAGGGAGAGTCTGAAGATGGAGCCACTAGCAGATGTTGCCTTACTGCCGGGAGAAGAGAGAGTGATagACAAAGACCTCATCTACATGTGCCCGTTCAATGGAGCGCTCAAAGGGAAAGTGTTCATCACCAATTACAGACTGTACTTCAAGAGCACTGACTCGGAGGTCACGGTTACGCTGGATGTGCCCCTTGGTGTCATCAGCAGGATAGAGAAGATGGGCGGAGCCTCCAGCCGAGGAGAGAACTCTTATGGGCTGGACATCACCTGCAAGgacaTGAGGAACTTGAGGTTTGCTCTGAAGCAGGAAGGTCACAGTCGCAGAGACATTTTTGGGGagctttttaaatatgcattccctctctctcatggACTGCCAATCTTTTCATATTTGAGCCAGGAGAAGTTTGAGGAGAACGGCTGGGCAGTTTACAAAGCCATGGATGAATACAGACGTCAGGGTCTGCCTAATGAGAGGTGGAGGATTTCTTTCATCAACTCGAGCTATGATCTGTGTGACACTTACCCCACCATCCTGGTTGTCCCATTCCAGACCCCAGATGAGGATTTGCGGCGAGTGGCCACGTTCCGCTCGCGCTGTCGTATACCGGTGCTGTCATGGATCCACAGGGAGAAGCAGGCGGTGATAATGCGCTGTAGTCAGCCCCTGGTGGGAATGAGTGGCAAGCGCAATAAAGACGACGAGCGCTACCTCGACGTCATCCGTGAGGCCAACAACACGCCCAAACTCACCATCTATGACGCCAGGCCTAACGTTAATGCTGTGGCCAACAAGGCCACAGGAGGCGGTTACGAGGGTGAAGACGCCTATCAGAATGCAGAGCTGGTCTTCCTCGACATCCACAACATCCACGTGATGAGAGAGTCACTAAAGAAGCTGAAGGATATTGTTTACCCCAATGTGGAGGAGTCCCACTGGCTGTCCAGCCTGGAGTCCACTCACTGGCTGGAGCACATAAAGCTGGTGTTGTCAGGAGCAATTCAGGTAGCAGATAAAGTGTGTTCGGGCAGCTCGGTGGTGGTGCACTGCAGTGACGGCTGGGACCGTACGGCTCAGCTCACCTCTCTGGCCATGCTGATGCTGGACTCGTACTACCGCACGCTCAGGGGCTTCCAGGTGCTGATCGAGAAGGAGTGGATCAGCTTCGGACACAAGTTCGCCTCGAGAATCGGCCACGGAGACAAAAACCACGCGGATCAGGACAGGTCGCCGATATTCTTACAGTTCATAGACTGTGTGTGGCAGATGACCAAACAGTTCCCAACAGCCTTTGAGTTCAATGAGCATTTTCTCATAACAGTCCTGGATCACTTGTACAGCTGTCGCTTTGGCACGTTCCTCTACAACTGCGAGAGCATCCGTGAAAACCTTaaagTCCGATCAAAGACGGTGTCCCTGTGGTCTCTGATAAACAGTGACATGTCGTCCTATGTGAACCCCTTTTACACACACGAGGCCAGCCGTGTGCTTTACCCTGTAGCCAGCATGCGCCACCTAGAGCTCTGGGTGAATTACTATATCCGCTGGAACCCTCGCATACGGCACCAGcaaAGCCCAGTTGAACAGCGCTACAAGGAGCTCCTGGCACTCCGCGATCAGTACCTGAAGAAACTGGAGGAACTGCAGCTCTCTGACTCTTCCCCTTCCTCCACCCACCTGACTAACAGCTCCACCCCGAACGCTGCCTCTCCCAATCAGCATCTCACGCACCTGCAGACGCCCTTCTGATGTCGCAGAAACACCCACTCAACACGCAGGACGTTTTGTACATAgcaatagtaataattataacGCTGTTAGTAGTGATGTCAGCGATAACCAGTAACGGAAAAATATGCGATTATGCAATAATGTCACAGCACGGCCTTCTTAGCGCAAAAGTCAGTCAGGGGGGAACATGAAGCCTTAAAGACGCAGCGgtatgtttttatgtgtgttgCTGGTAATAGCTCTTCCTGAACTGTGCGTGTGGTGAAGAAAATTCATGAAGGACCAGAAATAAGAATGTGATGTATGCTGGAGGTGTCAGTTTGTGTGTTATGGTGACAAGGCTGTAAGTGTGTGAAGTGGATTCGGACCACGTGTGGTGATGCCTGAACACAGAGTATGAGTATGAGCTAGTTTTAGCTACTGAGAAAGAGATGGTAAGTTTTGTACGGTTAATTTCTCATTGGCGTAACTGCCTGGGAAATAGCGCACGGTTCAGGACGAGCTATTTACTTCTGCATGTCTGATTTCCGCTCAGTCCGATATCATCCAGAGGTTGTGCATTGTCTGTGTCATAGACTTGGTCGAATTTGTGACATGAACTCAAAAGTGTTTGACCACATAGCATTTGTCTTGAGTAAGTTAAGACAAAGTGCAAGTGTTGTTTTAACATTTCAAGCATTCAGGGTATTGTTTGCTCAAAATTGACATGTGCAGACTGGGAGGAAAATGTCCTAAAAAGCTTTGGATGCGCTTATAATACAGAACCAGGGTTTTGGGGCTACAAAGACCAGTTCTGTGCCTTTTCTATCTGAGGTGTTCTGCAACCTCAAGTAGACATTTTATAAGCAAAACGATTGTTTTTCTGCAGGCGGCATCGGTGGCAATGAAGGAGAAATTTCTTCTGGCTTCCATTTCTGATCTACAGGGTCATACTCCAGTCACCATGCACCAGTGACTTTGGGTTaagttttaaaatacataaagtACAATCGCCACGGAGTCTTCAGCTAACGTTCAGGTTACCTCCTGTGGACAGAAGCTGCATAGTCCATTAGAGCTGAAACTAAAGCTAGTGATTTGGGAGAAGCTGCCCTCTTGAGCTGTTCCGGTGTCAGTACTATATGTTGCAAAAACCCGGCATTGAGACTGTATGCATGTAGGAGCAGCTCATCAGGGCACCTGGGTGCCATAACTAATGCTGCCTCAGAAGAGCTGACCTTTTGAAGTCTTTGGCCTCAATGAGGAGATGAAGTTTAAACCATATtgtgagaagaagaagaaaaaaacaaaaaaaacaaacacaaaacactttgctgttggttgtgttttttggggggagaatctattttttattttatataagcaCCATAATGATGTAATTACCTCAACAAAAGCCTATTTTACTGTTGGAACTTCTATTgttgtaaaatataattattttattcagtgtaAAATTTGACAGTTTTATAAAAAGAAGAGTAATAAGAAAATCTGTTTTGATTGGTTGAGCTGTTGGTAATTAGTGGACGTCATATTTCTTTACTGGGCATTTAGATTTGCTTTATACCATTTATAGAGATGTGAGAGCAATGTCAGAATTATGTTCAACTCTAGGGAGGTTTCATTCTCAATCTATTTGCTGTGAGTGTAAAACTGAGTGAAGGAGTgtatgttgtttcttttttttttgtggcatgGGGGGTATTATCTGACGTCTTTGGCCTTTTAGGGATCcatcttttctgtttctgttctccCTCATGTATACTCCACTGTTTGATGACCGCCTTTTGTTCTGTAAATAATGctgattaaattaatttaaagatttttacacGTCTAAAGATGACATGCACGTGCCTTTCAGTTCTTATATGTTTAACGCATCTCCTGTCCTGGTGTTCGAAGCCTAGTGCTCAGATATGcagtagaaaaataatcaagacAGCCATGAGTGATGCACATTATACTTTTACTAACATAACAGTCACAGTGAATTTGTTCACATGGTCTCACTCAACACCAATATCTCAGAACGGCTACTTCACCAAATTTCTCCTCGCCATTTTTGAACTTATGGCACCACCTCCGTAGAGGAGCATTATTtaaagcagtggttctcaaagtgggttACAGAGACCCCAGGAGTCCATGAAACATAACATGGTCACTGTTTTtgttacagcagtgttaatCACAACCTACCATTACCAAAGTTGTTCCATCTATTATTAGGTCCTTATCGTTATTAAGCTGTGTGACTTGTAACTTGGATTGACTCGGTTTAATCCAAGCATCGGTAACTCAAAAAGAATTGTCATGTCTACTTGAAcctgtgttctgtcagtggacaGTCCCGGAATGAAAAGgtctatggctccaataaataaacaagataaTATTTTACATGTGGAATAATTGGATGTTCATCAAA

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007528 neuromuscular junction development biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0007626 locomotory behavior biological_process
GO:0010506 regulation of autophagy biological_process
GO:0046716 muscle cell cellular homeostasis biological_process
GO:0009790 embryo development biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77765 lncRNA upstream 508658 16770605 ~ 16770843 (+) True G65663
TU77754 lncRNA upstream 516040 16758260 ~ 16763461 (+) False LOC113539905
TU78081 lncRNA downstream 27627 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA downstream 49468 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA downstream 50616 17358486 ~ 17359569 (+) True G65939
TU78075 lncRNA downstream 94689 17402559 ~ 17403879 (+) True G65927
TU78076 lncRNA downstream 94689 17402559 ~ 17403855 (+) False G65927
XM_026936021.2 mRNA upstream 4319 17208503 ~ 17275182 (+) True si:ch73-211e3.1
XM_026936043.2 mRNA upstream 90049 17185021 ~ 17189452 (+) True LOC113539921
XM_026936966.2 mRNA upstream 318692 16939461 ~ 16960809 (+) True LOC113540460
XM_034304012.1 mRNA upstream 318692 16941044 ~ 16960809 (+) False LOC113540460
XM_026936432.2 mRNA upstream 358555 16825208 ~ 16920946 (+) True exoc6b
XM_034303556.1 mRNA downstream 751 17308621 ~ 17329546 (+) True mtmr1a
XM_034303557.1 mRNA downstream 751 17308621 ~ 17329546 (+) False mtmr1a
XM_034303558.1 mRNA downstream 751 17308621 ~ 17329546 (+) False mtmr1a
XM_034303559.1 mRNA downstream 751 17308621 ~ 17329546 (+) False mtmr1a
XM_026936026.2 mRNA downstream 752 17308622 ~ 17329546 (+) False mtmr1a
XR_003404112.1 other upstream 517626 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 517854 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 518163 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 518394 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 518682 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 301834 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 456591 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 692288 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 805574 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 889442 18197312 ~ 18208564 (+) True G66492

Expression Profile