RNA id: XM_026936048.2


Basic Information

Item Value
RNA id XM_026936048.2
length 2328
RNA type mRNA
GC content 0.41
exon number 2
gene id si:dkey-6n21.13
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17520276 ~ 17523339 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTGGTGATCAGTACACTATAGGTTGGTTAGACCTCCTTActgcttttcttttaaactaGAATCTAATACGTATACAGAATATGTCGGTTCTATGTCCTGCCTAGTCAGAGTTTGTATCTTCAAAAGGACAGCTCAGCAGAATAGAGGAAAGAAGATAGACAGGGGGAGGGACAGATGAAGAGGTGAGGGGAGACCATGAAGAAGGGAGGGATGCATAGAATGGTCCACAATAGATACGACAGTCGAGGTGAAGTAGAGCAACAGCTTATGGTTCTGAAGTGAACTAGAGAAGAATAATAGTTTTAGTACTTTTTCTTATCTATTTATCTGTGCTTTCTTGTTCACACTGATGATGGATGGACAATGAACTAGGAGTGTTTTGGTATCAATTTTCACTTTGATATTTGGGATTCAGTTGCTCAAAAAATTCTCTCCTGTGGAATCGAAACTCAAATTGGACCACCAGGCTGGAAAAACTGGAAATTTAGACACATTCCAGAATTGGAATCAGGAGCTGTTTTTATGGATGCTCACTGTGACAATGACACAGAATCACTTCCTTAATAAGAGATGCAGAAGCAATCAGAAATGGTGACAGACACTCCTACAGGCCTGTCCGAAACAGGACAAGGTGGTGACAcccttttcctcttttcatctAATTCCTCTAGTGCTGCCTCCTGCAACATTGATGAGTCTTACAAGTACATCTTCCTTCCTATCTGTTACTCCTTCACATTTGTCTTTAGCATCAGCCTCAATTCTGTGGTGCTCTATCGCTCTTTTCGCCGTACCAAGCACTGGAATGTGTCCCTAATTTATATGGTGAACTTGGCTACTACTGACTTTATGTACGGCCTCTCCCTGCCATTCCTAGTGGCCAGTTATATCATGCATGACAACTGGGTCTTTGGAGATTTCATGTGTCGCTTGGTGCGCTTCCTGTTCTACTTCAACCTATATTGtagcatttttttcctcacctgCATCTCTGTGCATCGCTACCTGGGCATCTGTCATCCCATGAGGACCATCACTCTAGAGACCAAGCGGGCTGTAAAAGGCACTTGCATTTTGGTATGGCTTGCTGTCTTTGCCCTCACATGTCCTATTTTTCGATTTGCGCAAACAGAGCTTCTTCCCCGTCGAAAGGATGGTGGAGCATTAGACGTACATGAAGTGAATGGtgacacacacaaatccaaCACAAGTCCAAGCACTGAGATGTTCCATAACTGCTGGGATGATGCTATTGATAAAGAGTTCCAGGACTATGTTCCTTATGGAATAACTCTCCATCTTTTGGGGTTCTTTGTGCCATTTAGCATCATAGCCTGGTGCTACTCACGTGTGGTTATGACTATATTTCGAACACTGCACTCCCAACCTCCTGCTAATGGACCAAGGGCAAGACAAGGAAGCAGGTCAGGGACAGGAGGAGAAGGCATGTCCATTGTTCTCGGGGCTCATTCACCTTACATAAACAGGCGTCGCAAGTCCATCAAAACCATCATAACCATTACTCTCCTCTTTGCCCTTTGCTTCTTCCCCTTTCATGTTACCCGCACTATTTTTTTGGTGCTGAAAGTGACCAGCAGGGTGCAGTGCCATACGATGCAGATGGTCTCCATTTGTTACAAAATTACTCGGCCACTAGCATCCTTCAATGCCTGGCTTAATGCTTTGCTCTATTTCCTCACCAAGGAAAAAAGTGGACCCTGCTGCAACAAACCACCACCTTCCCAACATGGGCTCCTTTGGCCTTTACGGATGCTGGGAAAAGGAGGGAACGAGGAGGAAGAAGCTGAAGAGGCAGTGAATCATAAAAACAATGAACTCAAGGCAGAAAACAACATATTCACAGACTTACCTTGAgacaaaatataagaaatatgtaaaatgtgttttgaatGTTAGTAATATGAATTGCCTGGATGTAGAGTCATATGTACTGGGGAAAATCtcttaaaatgtattcatttatttccttgtGCACTAATAtaaaattttggaaaaaaagaaatgtgtcaaTTGATAGTCTAATAGTGTGATTGTTAGCAGATAGCAATTATAAAATTTGATTCATGTGATTCAGTAATATCATATTACCTATGGTCTGTCTTTTGCCCTTTTTGCCCATATTACTTGACATGATATTACCAGCTTCTGGGACACAAAATATAACTACACAAGGACATGTTTATCTCAGTACTGGCCTTGGGTATTTTGATCAATATCAGTGAGTGCTGTgacatgaaaatgattaaaatgtaaataaattatatttccaTGTACTTTTGAGCTCactaaaagaaatgaaatgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78089 lncRNA upstream 17631 17410994 ~ 17502645 (+) True G65933
XR_004577991.1 lncRNA upstream 35354 17453446 ~ 17484922 (+) False LOC117597048
XR_004577992.1 lncRNA upstream 35354 17457745 ~ 17484922 (+) True LOC117597048
TU78090 lncRNA upstream 79904 17431077 ~ 17440372 (+) True G65934
TU78075 lncRNA upstream 116397 17402559 ~ 17403879 (+) True G65927
TU78323 lncRNA downstream 53765 17577104 ~ 17578946 (+) True G66124
TU78331 lncRNA downstream 70293 17593632 ~ 17634867 (+) False G66128
TU78335 lncRNA downstream 70293 17593632 ~ 17634867 (+) False G66128
TU78342 lncRNA downstream 70293 17593632 ~ 17634867 (+) False G66128
TU78336 lncRNA downstream 70415 17593754 ~ 17634867 (+) False G66128
XM_034303569.1 mRNA upstream 110 17508425 ~ 17520166 (+) False si:dkey-6n21.12
XM_026936070.2 mRNA upstream 110 17513512 ~ 17520166 (+) True si:dkey-6n21.12
XM_034303561.1 mRNA upstream 19380 17426669 ~ 17500896 (+) False alox12
XM_026936030.2 mRNA upstream 19380 17487423 ~ 17500896 (+) True alox12
XM_034303560.1 mRNA upstream 82005 17426694 ~ 17438271 (+) False alox12
XM_034303563.1 mRNA downstream 50251 17573590 ~ 17586296 (+) True LOC113539911
XM_034303564.1 mRNA downstream 80968 17604307 ~ 17609478 (+) True LOC113539941
XM_034303565.1 mRNA downstream 80968 17604307 ~ 17609478 (+) False LOC113539941
XM_034303570.1 mRNA downstream 86153 17609492 ~ 17614348 (+) False LOC113539940
XM_034303837.1 mRNA downstream 93820 17617159 ~ 17620019 (+) True LOC117597112
XR_003404112.1 other upstream 758401 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 758629 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 758938 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 759169 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 759457 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 86365 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 241122 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 476819 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 590105 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 673973 18197312 ~ 18208564 (+) True G66492

Expression Profile