RNA id: XM_034303776.1


Basic Information

Item Value
RNA id XM_034303776.1
length 1936
RNA type mRNA
GC content 0.46
exon number 6
gene id adcyap1a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21730195 ~ 21735758 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTCGACAGGGAGTGAAAAGGGCTCGCCTCGCCACAGCACAATAAAACTCGCGCTGCCGCCCTGAGACTGAGACATACGATGGCGGCACGCGATCTTCCAGGCGTCCAGCGCAGCGGAGAAATCTGAGCAACGCGCTTCAGAAGTCTACAAGTCTTGCGCGCTGCTGCTGGGCAGAGAACAGGGAGAGTGCCAGGGAAGTTTTATAAGAATTGGGAGAAAAACGCCgtacagagcaagagagacagagagagagagagagagagagagagagagagagagagattttatcTCGCAGCCTCACTGGACTGCATCCCGCTACTTGCACCGCTGTAGGATGATCATGTCGGGGAGCAGAGGGACTTTAGGGTTCCTCATCTACGCGCTCCTGGTGCAGTGCAGCGCGTCCTCTCCGCTCAGGCTGGAGACTGCGGCTTATGATGAAGATGGCACTTCATTAGCAGACTTGGCCTTTGACTCAGAGCAGCTCGCACTCAGAAGCTCCCCATCAGGGACGGACGATGTCTACGAGATATATTCTCCTCCAGAAAAAAGAACGGAAAGACATGCAGACGGGATCTTTAATAAAGCCTACAGACAAGCGCTGGGTCAGTTATCAGCCCGGAAATACCTGCATTCTCTGATGGCAAAACGCGTCGGagGAGGCAGTGCTATGGAGGATGCAGAAGCTCTGGCTAAGCGCCACTCGGACGGCGTGTTCACTGACAGCTACAGCCGCTACCGGAAGCAAATGGCCGTGCGGAAATATCTGGCCGCGGTCCTCGGCAAAAGCCCTGAAGACTTAGATTTGCACCAAATTCTACAAGGCATAGACATTGGGGCGCTCCCGGATGGGCATGAGTTTGAGGCATTTATGAGGAACTGGCTGAGGCAGTTCCCTTCCAATCTCCTGGTGAGTGGCTTTGTGGCTCTGGTCCGTACCTTAGCCCTTTACTTTTCGGAAAAGTGCCTCTCactcttccttctttctcccGTGACGTTCTCCCCCTCTGTCATCAAGTACTTAAATTTCACGAGCCAACTCCTTTCCTTTCTCACCTGTTCACACTCTACTTGATAACTTTCATACCATGGTATGTTCTCACTTCAGAAGAAAATAGCTCTTGGGTTCTTTTCATGAAGTAAACGTGACACACTCTCCAGAACACAGCTGTAGAATAGAGGCCTCCTCAGATATGCCTCTTTCTCTGAGCCACCACACAACCTTTCCTATTTCTGTAAAAGCATGTCCAAGCACCTTATCTACCATTTTCCAAACTGTTATTCTTCACCTCTCTATCTTGAGAATGGGAGCTTGTGAATGTGTTTACTCATTTATTACAAGCATCCAATTCAGCTTTTATAGTTGTGGagtatctgtatgtgtgtaaaatgtttctCATGAATTTGTGGTTGTGGAAAATTagatctgggattttttttccattcttttattctgtatttgAACTCATAGTTTTTCTCCTGTTGCAAAAACACACTGGGCACCATTAGTTTTACAGATTAAAGTCTCTCCTTCTTGACAAAACTTGCCCTGAAATCTGCTTTTGTTAATGCCAGATATCTGCATTTTCCATGTTCATCTCTCCCTGTGTTCATCttactgctgtgtgtggaaACGTAATTTGGGACTTCTGGGTACTTTTCGTGTATCATGTCTCTTTAGTTGCAAATGCTAATAGCCTTATCTAGGATTTCACAGCTGTATGAGGCTGTGTACAATTTTAATTGCTTACAGAGGCAATTTGCTCATGTCTATGTTTATGTATGCAAAAAGATGAGAATATCTAGAGTAAAATCTCAGAGTTAAGGAaggatttggggaaaaaacactgcTTAAAGCACACCTACTCAAAGCTGCAGTGAATATATGTGTGAAAGTGTAAGAGAGAGGGTGTGAGTGTGAAATcaatgtttgt

Function

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0007420 brain development biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81377 lncRNA downstream 229186 21496932 ~ 21501433 (-) True G68585
TU81365 lncRNA downstream 254843 21474587 ~ 21475776 (-) True G68577
TU81291 lncRNA downstream 257587 21472819 ~ 21473032 (-) True G68520
TU81290 lncRNA downstream 258780 21471632 ~ 21471839 (-) True G68519
TU81263 lncRNA downstream 322412 21407111 ~ 21408207 (-) True G68495
TU81559 lncRNA upstream 92515 21828273 ~ 21828833 (-) True G68740
TU81560 lncRNA upstream 94318 21830076 ~ 21830642 (-) True G68741
TU81562 lncRNA upstream 99464 21835222 ~ 21835426 (-) True G68743
TU81563 lncRNA upstream 100012 21835770 ~ 21835995 (-) True G68744
XR_004578020.1 lncRNA upstream 104723 21840481 ~ 21843581 (-) True LOC117597088
XM_026936632.2 mRNA downstream 106987 21582222 ~ 21623632 (-) True smchd1
XM_026935855.2 mRNA downstream 150076 21554526 ~ 21580543 (-) True emilin2b
XM_026936692.2 mRNA downstream 238283 21488187 ~ 21492336 (-) True myl12.1
XM_026935849.2 mRNA downstream 244806 21480615 ~ 21485813 (-) True fastkd3
XM_026936823.2 mRNA upstream 13077 21748835 ~ 21757727 (-) True tyms
XM_026936531.2 mRNA upstream 42118 21777876 ~ 21785375 (-) True hacd1
XM_026936723.2 mRNA upstream 181455 21917213 ~ 21933593 (-) False nsun6
XM_026936722.2 mRNA upstream 181455 21917213 ~ 21933342 (-) True nsun6
XM_026936724.2 mRNA upstream 181455 21917213 ~ 21932951 (-) False nsun6
trnaa-ugc other downstream 312380 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578106.1 other downstream 359609 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other downstream 359609 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other downstream 359615 21368250 ~ 21371004 (-) False LOC113539989
TU81225 other downstream 401369 21326046 ~ 21329250 (-) False G68462
TU81579 other upstream 198768 21934526 ~ 21935169 (-) True G68760
TU82055 other upstream 896427 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 1558193 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 1744207 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 1744294 23480052 ~ 23480566 (-) False LOC117597073

Expression Profile