RNA id: XM_026936105.2


Basic Information

Item Value
RNA id XM_026936105.2
length 4190
RNA type mRNA
GC content 0.47
exon number 9
gene id emilin2a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22838027 ~ 22851158 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCAAACTTGTGAAGTCGCTCGGACTCTCCTTCTTTCTGTGTGTAGGCTTTGGGAAGGCTGAATTCAGCCAGACTctagttttatgtttaattgcTTGTGGTATTTGTCTTTAATTGTCAGGATTTGCAATGAGGGTTAAGGCTCATCTGAGCAGTTTGGGCTTCGCTGTGCTGCTTTTGGGAAGCGTGTCTCTGAGTCTGCAGTACAACGCGCACAGGCTCAGAAACAAAAACTGGTGCGCGTTTATCGTGCAGAAGAACGTGAGCTGTGCAGTGCGCGCGGACATTCCCGCAGTGGTTGAAGCTGAAGCTGCGCCCTGCCCTCCACACCAGCCTGACTGCGAGCCACCAGTGATGTATCAGACCCATTTTCAACCCAGTTACAGGATTTCCTATAAGACCGTTACTGAACTGGAATGGAGGTGCTGTCCAGGGTATCAGGGTCCAGACTGCAAAGAACTAAAAGGCTCCCCAAATCGACAGATGTTACTTAAACCTCAACCAAAGCCACATTCTCAGCCCTATACTGGATACACGCAAAACTCACAAAGGCCAGAGAGACGGGAGACAGAGCAGTACAACACCTACCATGAGGTTGAGAAAACTCGTCAACTGGAGGCAGAAGTGCAGCGCCTTTCTCAGACAGTGTTGGACCTCCAGGCAGCCATGACTAGCATGACTGCGAACCTACGTACTGATTTACAGGAGGACACTAGCAAAATGCTCGTCACTCTCCTCAGCAACATGCATGTGCAAGACAGCGCAAAAACAGGCGGTACAGAGGAAAGCTTGATGCATCTGGATGGACACCAGGCCACAAGGGGACTGGAGGAGAGGGGCATGGAAAAAGTGCTGGCCAGGCTTAATGATGTGACAGATGCTCTGAAAAGCAAGGATGAGGCGATTGAGGAGCTGCGGGAAGCTGTGACTGGACACAGTGGCCAGATCCGAATACTAATGGATGCTTCTCAGGGACCAACAGTTACTGCTGGTGCCTCCTCAGACATTGATATCCTTCAGTCCTACATTGATACTAAGTTTGAGAAATTAAAGAAGGAGCTCGTTGTGGACATGAAGGATGAGATAGCAAAGCTGAAGAATGCATGTGATGATAAGATACTGTCTTTTCAGAAGACCTGTAAAGAGGGATGGAAGATAAGTTATGACAACCTGACAAAACTACTGGACAGCCGGGAGGCTGAGCTCAAGAAGGAGATACGCGAGCTACATCTGGATATGGCTATGTCTGATGGGCTGGTGCGCACTCATAGACAAACAGCTCCATTTAAAGAGGATGACAGTGATTTACGAAACATGCTTCAGCGTCTGGTAGACGCACATCAAGTCTTAAATGCCCGTGTGGACAACGAACTGGGACATCTGTCCATGCTACAGCTGGAAGATGTATTTGGCCCTCGCTTGGATGAGCTTGAAGCCAGGATGAATGTGACCGAGAGGAATGCAGAAATCTACTGCTTCTATGTGGATGAGAAGTTAACCAAGGCTCTAGCCGAAGAGACAGCAAAGATCCAGGCGCTCTTGGACAAGAGACTGAATTCTATGGAGGACCAGTTTACAACCATGCTGATCGAAATGAGTAACACCTCCTTCCCAGGGATGTTCAGCGAGTCTGTTGATGCTCTGCAAACTCAGGTTAATGCAAACAAGTATATGATTCAGGGGCTGGAGGACAAATTGAATGCTATTGAGCACATATGCTCCACTGACTGCAACTCAAGTCCAACCATTGATCCTCAACACCTAGGCGGTCTGGAGAGTATTACAAAGGATGTGAGGCACTGTAGAAATCAACTGGATGTCCTGAGCACTAATGTTGAAAGCAATGCTGAGAAGCTTGTACAATTAGAGGGTGTAGTTGATCGTCTGAAGCTTGAGAATCAACTGAACAGTGATAGCATGCGGGATGTGCAGAACAAGCTGAAGCCTCTAATGGATAATATGAATGGCCTGAGTGGCGCTGTGACTGGGCTGGGAGATGTCATGAGCAAGTTTAGCCAAGATCTTCAGACCCTGAACTCTAGTTGTTGTCAAAAAGCACAGGTAGAACAGATTCAGACATCATCAATGGTACCACCTCTGTCCCATGAGGTAAGCAAACCAAGCCACAGTCAGGTGGAGGAGCTCAGCAACAGATTAGATAGGCTGAGATCCCAAGTGACTGCAGAGTTGAACCTTTGTAAGGAGAAGGCAGCAGGTGCAGCTGAAGGTATCTCTGCAGTAGGCAGCAGGATCACTACACTAGAAGAGTTGTGTGGGAAGGTAAATGATGAGAGAAATCAAGTTCAGGCTATGAAAGAGGGTCTGGAGAGAAACTTGGCTCAAATGAACTCCACACTGCAGATACACTCCAGGGGGATCAGCAACCTCCAGATCAATCTGCACAATGTTCAGACTCATCTTGCGAACATTAAGAACCATACCACAAAACAGCAAGGAGTGCCAGTGAAGCAGGAGAAACCCAGTACTCTGCCTGATTCTAGGAGTGTAATCCCACCAAGGAGGACATACATTCCCGAGATCCACATTCCTGTGTGGATACCCCAGAGGACAGTGCCTGTTACTTCCCGTCCTTTTGTACGCCAGCCGCAGGCCGAGCCCTCAAACCCACGCCAGCCTTATGCCCCCCTGCACCCATCAAGCCCACACCAACAGCCTAATCAACCAGTTGTCTTGACTGGAGTGGCCGGACCACCCGGATATGCACAAAGAGTCCCCTCTCGACGGGAGCGTGGATCCCACGAGTTAGGGAAACCCATTCATGGATTCGCAGGTGCACCAGGCCATCCTCCCATAAATCCGGTAGCGTATAAACCCCACCCAATCGCAGCTTCCCAAGTGTTATGGAACCCTGCACAAAGGCTTGTTGCAACACCAGTGTCGTCTGAGAAAAACATGTTTGTAGAGCCTTTCTCCTTTTCAGCTGGTCTCACACATCAGGCGTTTTTGGGAGACTTTGGCATCATCCGTTTTAATAAAGTGCTAGTTAATGATGGAGGGCACTACAATCCCcaaacagGAATCTTCACGGTGCCTGTGAACGGTCGTTATCTAGTCTCAGCCGTGCTGACAGCTCCACAGCACGAGCGGATCGAGGCTGTACTCTCTGTGTCTGAGCGCAGCGTGCAGAAACTAGATTCAGCAGGTTATGGAGGACACAACGGGCAGCTCACATCAAGGCCTTGTCAGTGTGGTAGTTCTGTCTCATTCAGCCTCATCCTCTCGCTGCGCGCAGGAGATCGAGTTGCACTAGTGCGCACAGCGGGCACACTTGCCCTCTCTGAGGCCAAAGAGATGCTCTCCACGTTCAGCGGTATCTTCCTCTATTCCACTCAGGTTCACAGATAAcatccagcaaaaaaaaaaaaaaaaaaaaaacacacacatacacacacagcagaggaCTGCCTGGCTGTGCAGCTCTCCACATTTACATGGCAGCCTGTGGTGAGCCAGACGACACTGCAAGGAAATCACTGCTTGGCTTTGGCTTGAAagaaactacagaaaaaaaaagtgccacaCATTGCATTGTTGTACCATGGAAAGCGGTGCATTGAGATATTTAGTCATACTccacatattttcattttataatgtatttactTACACTGCACCTTTTAATATAAAAAGGCGGTTTATCATGAGTGACAGACCAGATTGTATAGAATCATTAATCAACAGACCAGATTGTATAGaatcattttattacaaatcaGTGAGCAGTATTATAAATGCCTTTATTTTgctatatgtaaggaataaaacagggcatgctgttataggacaataataaATGACTGGGTGTTGTGATGCCATTACCCCTCTGAagacagcatgtcccaaagtgttttattcctcttataccacgggAATTAACCAAAgactgccatttttatttattaatgaataggTCATGCATTCAACCATTTCTAGTTACCTTTGATGTTGTGCAGTGTCTGCCAAAAatgttagctcctgttatcacttcccTTACAACAGTCGTTCCCACaccagcgttttttttttctcctaaagacaaacaatgcagcttgccatgttgccaagaaaccacaaagatgTTCCCATCTCATAAAACGTAAAGTTACGGCTCTACCTCTGGAGACTCGTTCCAGAAATGATAATAAACGTCTCTTCACTGAAAACCTca

Function

GO: NA

KEGG:

id description
K24246 EMILIN; emilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82146 lncRNA downstream 28778 22808906 ~ 22809249 (-) True G69254
TU82140 lncRNA downstream 32119 22803386 ~ 22805908 (-) True G69248
TU82121 lncRNA downstream 66015 22771386 ~ 22772012 (-) True G69233
TU82087 lncRNA downstream 160109 22677376 ~ 22677918 (-) True G69203
TU82062 lncRNA downstream 185581 22649939 ~ 22652446 (-) True G69183
TU82235 lncRNA upstream 203356 23054514 ~ 23055383 (-) True G69320
XR_004578004.1 lncRNA upstream 421004 23272162 ~ 23273614 (-) True LOC117597081
TU82439 lncRNA upstream 427417 23278575 ~ 23278782 (-) True G69503
TU82468 lncRNA upstream 479858 23331016 ~ 23331535 (-) False retreg1
TU82494 lncRNA upstream 545506 23396664 ~ 23397963 (-) True G69551
XM_034303297.1 mRNA downstream 136876 22679189 ~ 22701151 (-) False rgs20
XM_026935863.2 mRNA downstream 147109 22679189 ~ 22690918 (-) False rgs20
XM_026935862.2 mRNA downstream 147109 22679189 ~ 22690918 (-) True rgs20
XM_034303845.1 mRNA downstream 175545 22653613 ~ 22662482 (-) True LOC113540005
XM_034303443.1 mRNA downstream 201939 22631245 ~ 22636088 (-) False LOC113540019
XM_026935864.2 mRNA upstream 135503 22986661 ~ 22990616 (-) True adcyap1b
XM_026935865.2 mRNA upstream 135503 22986661 ~ 22990612 (-) False adcyap1b
XM_026937238.2 mRNA upstream 189950 23041108 ~ 23050113 (-) True clul1
XM_026936974.2 mRNA upstream 298968 23150126 ~ 23174379 (-) True mrc1b
XM_034304094.1 mRNA upstream 298968 23150126 ~ 23173899 (-) False mrc1b
TU82055 other downstream 202275 22632185 ~ 22635752 (-) False LOC113540019
TU81579 other downstream 902858 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 1419788 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578104.1 other downstream 1467017 21368250 ~ 21371010 (-) True LOC113539989
XR_004578082.1 other upstream 442793 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 628807 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 628894 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 642221 23493379 ~ 23493919 (-) True G69592
LOC117597074 other upstream 643877 23495035 ~ 23495897 (-) True LOC117597074

Expression Profile