RNA id: XM_026936122.2


Basic Information

Item Value
RNA id XM_026936122.2
length 3781
RNA type mRNA
GC content 0.40
exon number 2
gene id sstr1b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20755876 ~ 20768426 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgcagcagcagaagactggCGGCTGTTTGGATGCGCAGAAGCAGCAGAGAAGAGAGGATAGCTCAGCTGTCTCCAGTCTCCAGCATCCTGAGAGGGAAACCACGGCACGGGCAGCACAGGCATCCTGCACCTCCTGCatattttcctttccttccacactcactcatacacatgCATTCTTATCTGGACCAAACAAGATGGTGCATATGGACTAGTGCAATACATAAGGGGACAAACATAAGAATTACAGACATGTGATTATCATTCCTGTGGATCCTGTGCCAATTTTTCCATCATGTGATCAGAGACACAAGTGCATACTTCATCATGTGATTGGATACAAGGCTGCAGCAAGGACAACGATTCTCAACGAGGGATTTTTTTCTGGAGGCAGGATCATATTGTCAAGAGGGTAGCCTCATAATACTACGATTTTCCAGCCctattttcatataaatagTCGGAATGTGCTCTCATTGCCAAGTCTGAGTGTTTGAGAGCCTCTCACTGAGCCTAGCCCACCAACACCTGCAACACTCTCATATATGCGCAAAGGTTTATTTATCAATGAACAAAGAATGTTCAAGCTGGAAATTCCACACATGGAACCATTTAGTCAGAGGATCCCAACTTGCTACATGGTCCATTGCCAAAAAGTTCCAAAAATTGATTTTCCTGATGTGCTTGAAACAAATTCAAGTGATTTAAAGAGTAAAACCCAAAGATTGTTGTTTTAACTTTCCCCAGTCAAGGACAGTTTTTTTGGATGAAGGATTAAATAAACACCATGTTTaaacctcaacactgttacttttaaaacaaaggtactttttaataaagtgtatCAAACGAAAGTGTATTAAAAGGTTTATAAGGACAATACCACGGAATGCTAGCTTGAGTGAACTTGGTTTaccaaaataagaataaaatggcTGAAGCTACAGAATATAATGGCACTGAAAACATGCTTTCTTCCACTGACCATCCCTTCAATTTCACCACTGAATATGAGGATTTTCAGTCAGAGTCCAATGCTAGCAAGATCATCATCCCTTCTATCTACGCCCTAGTCTGCTGTGTGGGCATCATAGGAAATGGCATGGTTATATACGTCATCCTCAAGTATGCCAAGATGAAAACAGCGaccaatatttacattttgaacCTTGCAATTGCTGATGAACTCTTCATGTTGAGCGTTCCATTTCTGGCCACATCAGCTGCGGTGCGTCACTGGCCGTTTGGATCGCTGATGTGTCGGCTGGTCCTTAGCGTGGACGGCATCAACATGTTCACCAGCATTTTCTGCTTGACTGTGCTCAGCGTGGACCGCTATATTGCAGTGGTGCACCCCATCAAGGCAGCCCGCTACCGCCGACCTACTGTCGCCAAAGTGGTTAACGTCTGCGTGTGGGGACTTTCACTTCTTGTCATCTTGCCCATCATTATCTTTGCAGACACTGTTCCAGCGCAGGATGGAGGGGTAGACTGCAACTTTCTGTGGCCTGAGTCCTCATGGTCAGAAGCATTTGTGGTCTATACCTTCTTGCTGGGCTTCTTGCTTCCCGTGGCAGCTATCTGCCTATGCTACTGCTTGATTGTGGTGCGTATGCGAGCAGTAGGCCTCAAGGCAGGATGGATGCAGCGGCGGCGCTCCGAGAAGAAGATCACTCGCATGGTGCTACTGGTGGTCGCTGTCTTCGTGCTTTGCTGGATGCCCTTTTACATAGTGCAGCTTGTGAGTGTGTTCTGCCAGCCACCAGACCCCATGGTGACTCAGCTGTTTCTCATTCTAAGCTATGCTAACAGTGGTGCTAATCCTATACTGTATGGATTTGTATCTGACAACTTCCGGCGCTCCTTCCAAAGAATTGTCTGCTTCCGCTGGTTGGAGAATGGACCAGATGCAGAGCAGGTGGACTACTATGCTGTGGCCCTCCGGCGACAAACAACATGTGGTCCACAGGACTTCCCTAAAGAGTGCTGCTTAGCCTCTGATATGGTGTTTCGCAACGGAACATGTACCTCTCGTACAACTACCCTGTAAGCTTTTCTCTGACTTTTctcaaaagcaaacaaaaaaaattcatgttttcATATGTAAAAAGGAACAATTTTAACTGTACTATAAGTACTTAAAATCACTTgatatttaaattattcattatatgTGCTGCTAACtgattgaaattttttttcttttgtatagGCTTCCTGACAAAGCTTAATTATGATTATATAAAAAGTCTTGTTCTTAGTTGTAGGTATTCAGTAAGTATCTGTGTCATgaatataacattaaatgtgttgAATTAAAGTTAACCAGGTGTAGTATAATTGCTTTAGCACAGCATTACTATGACAAGATGGGGTTAGCCATATCCACGTTGCTGTTCTTGATTAAATCATTCTTTCTCATAGTCATGTTTGTACAAGTCATGTGTCGTAGGCCcataatgtttataattatgtattaaaatgagaaCTGTTTAAGTTTGTGGATGTATGAATTTGAATTTCAGCTAGATCTTTGGATTATTTATCTCCTGAAGTCAAATATGAATGTTCTTCAttctatataatattttaaatattggaTGTGTGTAAAGCATAATTAATCAGCATGTTCTCTACATATGTGAGTATCTCTCTTGCTTGATTCACAGTTACCGTATCTGTATCATAAGTCTTTCCCCTTACActagagaaaaatgtcattgttcTAAGAAAGAGCTGTTATAACTCTCCCGGTGCTTATGGTCCCTCACTCCCTGATGTTGCGTTGTTGCGCCTGTTTGTCTCACACATCATTTTCAAGATCATCAAAAATCCAGAGTAATGGATGAAAAAATGACTAGTATCCCAAAGGTAAAAGTAACAaatcagaagaaaaataaagatgtgGTTTTTCAACTGACATGTGAAAACAAGGcatgatggttaaaaaaaaaatcacacccaAGAGACACCTCTTTCATTCTTCTGGATCTGGGAATTTTGGGTAACACATAACACTCActactgaagatcacatgtactatgttatttgtatgtttttgtttttcataattcTGTAAACCTCCTTTTCCTGAACAACACAGTCAACTCAGGAACTATGTATGTTTTATGCCAAATTGCAAAATCGAGCTTAGACATTTCAAGTAATTTCCAATGTACAGCATGTTAGTTTTATGGTCTGGACAGTTTCTTAACATACTTTAAATTGTTTCCAAAGAATAGAGCCTTGGAGATATGAATTTAGGAAATGCTGCCCAGGATATCTCTCTGAAGAACTGACAACAGCATTTGTCAGCATTTGTCAGCATTTGACTAAAAAAGGGCAGGGAGACACATATAACATATCACATCTCACTCAACAGTATAAATCTAAAGAgctcacatactgtacatttctccATCTATTGTCTTAAGACAAGCACATGTGCCAAACGTTCTGGCCTTGATTTACTAAAACTTGAAAATGCCtgcaaaaaacatgcaaaatctTTCTCATGCTATGTGATTTATTGAGAGTGATAGAGACTCGGAGAATGACATTTGCATGAACAAATGAATACTATCAAAGAGCCAGTATTAAATTTTGCAGAAGACCATTTCCAGGGAAACAACAAACCAAACAGGAAATAAGCTCATATTCTCACGTGTTGAGGGGGCACAGACCTGTGTGCTTTGTTCACTAAGTGGTGCTATaagatgtttataatttatcaaCAGATTAGCCTAAGCATGATTCTTTTCCCTGTAAGTCCTTACAGAA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0038170 somatostatin signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004994 somatostatin receptor activity molecular_function

KEGG:

id description
K22872 ASTC-R; allatostatin C receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80746 lncRNA downstream 119677 20635904 ~ 20636199 (-) True G68108
TU80745 lncRNA downstream 120083 20635532 ~ 20635793 (-) True G68107
TU80738 lncRNA downstream 124166 20630166 ~ 20631710 (-) True G68106
TU80707 lncRNA downstream 184946 20570399 ~ 20570930 (-) True G68080
TU80702 lncRNA downstream 189118 20559378 ~ 20566758 (-) True G68075
TU80832 lncRNA upstream 10127 20778553 ~ 20816280 (-) False znf16l
TU80840 lncRNA upstream 34991 20803417 ~ 20804104 (-) True G68186
TU81181 lncRNA upstream 536338 21304764 ~ 21313873 (-) False chchd7
TU81229 lncRNA upstream 552392 21320818 ~ 21321146 (-) True G68466
TU81220 lncRNA upstream 557650 21326076 ~ 21329250 (-) True G68462
XM_026935869.2 mRNA downstream 78732 20661726 ~ 20677144 (-) True peli3
XM_034303290.1 mRNA downstream 80473 20661726 ~ 20675403 (-) False peli3
XM_026937254.2 mRNA downstream 251468 20497680 ~ 20504408 (-) True ecsit
XM_026936378.2 mRNA downstream 270218 20479260 ~ 20485658 (-) True si:dkey-106g10.7
XM_026937198.2 mRNA downstream 300414 20447657 ~ 20455462 (-) False men1
XM_026935805.2 mRNA upstream 10112 20778538 ~ 20825520 (-) True znf16l
XM_026935868.2 mRNA upstream 67335 20835761 ~ 20838098 (-) True LOC113539812
XM_026937001.2 mRNA upstream 127015 20895441 ~ 20899092 (-) True mad2l1
XM_034303394.1 mRNA upstream 243826 21012252 ~ 21106343 (-) False ank2b
XM_034303392.1 mRNA upstream 243826 21012252 ~ 21106343 (-) False ank2b
XR_003404107.1 other downstream 611987 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 790038 19962616 ~ 19965838 (-) False snrpf
XR_004578057.1 other downstream 812509 19931590 ~ 19943367 (-) False LOC113539792
TU81225 other upstream 557620 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 599824 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 599824 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 599824 21368250 ~ 21371004 (-) False LOC113539989
trnaa-ugc other upstream 649742 21418168 ~ 21418239 (-) True trnaa-ugc

Expression Profile