RNA id: XM_026936170.2



Basic Information


Item Value
RNA id XM_026936170.2
length 1274
RNA type mRNA
GC content 0.52
exon number 11
gene id anxa13l
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27521690 ~ 27531090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CGTAAAGTAAACAGATGACGTCAGAGGCGTGACTGTGCAGGACGGGCGCGCGCGCAGGACGCAGTGAGAGTGTGAGCGCGTGCACTCGGGATCAGCGCGATAAAGATGGGCAACGTTCAACCCACGGTTGTTCCCTGTGAGGACTTTGATGTGATGGCGGATATTAAGGAGATCCGCAAAGCCTGCAAAGGAATGGGCACCGATGAGGAGACCATCATCTCCATCTTAGCTAACCGCTCCTCGGCCCAGCGCATGGAGATTAAACAAGCGTACTTTGAGAAATATGATGATgagctggaggaggtgCTGAAGAGCGAGCTGACTGGAAGTTTCGAGAAGGCGATCATTGCCATGTTGGATCCGCCTCACGTCTATGCTGCTAAAGAACTGCGACGCGCCATGAAGGGAGCCGGAACCGACGAGGACGTGCTGGTGGAGATCCTGTGTACCAGCACCAATCAGGATATTGTGAATATTAAGGAGGCGTACGCTCAGGTACACGAGCGTGACCTGGAAGCTGACATCGAGGACGACACGAGCGGAGACGTGAGAAACTTGTTGATTTCACTCCTTCAGGCGAGCAGGGATGAGGGTTTTGACGTGGATGAAGGATTGGCTGAACAGGACGCCATATCGCTGATCGAGgCTGGAGAAGGACGCTTTGGCACGGACGAGTCCACTTTCACCTACATCCTCACTCACAGGAACTACCTACAGCTTCAGGCCACCTTCAAATACTACGAATCCatgtctGGGACAGACATCCTCGATGCCATCAGCAACGAAGCCACAGGGACTTTAAAGGACTGCTACATAACTCTGGTTCGGTGCGCTAAAAACCCGCAGCTCTATTTCGCCCGTCGCCTGAACGCAGCGATGTCGGGCGCAGGGACGGACGAGGACACGCTGATCCGCATCATAGTGGGACGCTCAGAGTTGGACCTGGAGACCATTAAGGACATGTATCTGGAGAAGTTTGACGTGACGTTAAAGGACGCTCTGAGCTCGGACTGCGGCGGAGATTTTAAGCGCCTCCTGCTGGCTGTCCTTcactgaagagagaaagagagtcttACACTAATCCCTACACCAGGAATGAACCTTCTCACCAACACTGCctagaggaataacacacaggCTGTGTTCCGATACTGTTCTAACACGCCCTCGTCCACTTCCCCTGAAACTCCAGTCAGTCTGAAGGAAAATGGTGACAAATTTGTCtcttttattcacatttttacataacGGTAGAaaatcaatctttttttttt

Function


GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG:

id description
K17099 ANXA13; annexin A13

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85461 lncRNA downstream 44024 27474765 ~ 27477666 (-) True tsen15
TU85454 lncRNA downstream 76576 27444743 ~ 27445114 (-) True G72094
TU85433 lncRNA downstream 114871 27403137 ~ 27406819 (-) True G72074
TU85431 lncRNA downstream 119055 27401670 ~ 27402635 (-) True G72073
TU85300 lncRNA downstream 234992 27286239 ~ 27286698 (-) True G71955
TU85953 lncRNA upstream 38154 27569244 ~ 27970795 (-) False G72517
TU85956 lncRNA upstream 348448 27879538 ~ 27970795 (-) True G72517
TU85958 lncRNA upstream 363423 27894513 ~ 27970795 (-) False G72517
TU86050 lncRNA upstream 381780 27912870 ~ 27958488 (-) True G72607
TU86051 lncRNA upstream 443380 27974470 ~ 27980336 (-) True LOC117597146
XM_026936469.2 mRNA downstream 26763 27484777 ~ 27494927 (-) False acbd5b
XM_034303665.1 mRNA downstream 26893 27484777 ~ 27494797 (-) False acbd5b
XM_026936467.2 mRNA downstream 27453 27484777 ~ 27494237 (-) True acbd5b
XM_034303666.1 mRNA downstream 37857 27477467 ~ 27483833 (-) False tsen15
XM_026936527.2 mRNA downstream 65977 27447255 ~ 27455713 (-) True slc35a3b
XM_034303959.1 mRNA upstream 16733 27547823 ~ 27555987 (-) True pcyt1aa
XM_026937162.2 mRNA upstream 16733 27547823 ~ 27555986 (-) False pcyt1aa
XM_026937187.2 mRNA upstream 54484 27585574 ~ 27619191 (-) True gpr158b
XM_026936536.2 mRNA upstream 173191 27704281 ~ 27839097 (-) False dpp6b
XM_026936534.2 mRNA upstream 173191 27704281 ~ 27814268 (-) True dpp6b
XR_003404034.2 other downstream 89012 27428420 ~ 27432678 (-) False LOC113540508
trnat-ugu_4 other downstream 125467 27396151 ~ 27396223 (-) True trnat-ugu_4
trnat-ugu_3 other downstream 126261 27395357 ~ 27395429 (-) True trnat-ugu_3
TU85245 other downstream 317504 27203783 ~ 27204186 (-) True G71909
TU85159 other downstream 420832 27096602 ~ 27100858 (-) True G71832
XR_004578066.1 other upstream 16662 27547752 ~ 27555986 (-) False pcyt1aa
trnat-ugu_7 other upstream 89966 27621056 ~ 27621128 (-) True trnat-ugu_7
trnat-ugu_9 other upstream 93646 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_003404039.2 other upstream 484974 28016064 ~ 28041785 (-) False prkag2b
trnas-uga_1 other upstream 705096 28236186 ~ 28236267 (-) True trnas-uga_1

Expression Profile