RNA id: XM_026936203.2


Basic Information

Item Value
RNA id XM_026936203.2
length 1026
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC113540027
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21427185 ~ 21430580 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAGGGGGAGTGCAGCGCAGACCGGAGCACGGcgcagagatgatgatgatgggcgTGTGAGCAGCGCGTCGTGAGTTATCCACACCGGGTTCCAGTGGTAATGCGCTCATGGGGTCTGAGCGGGTGGAGATGGGGAAATGTCCAGAACAGGACACTGGAAATTCCGTCCAGACGCATATCACTTCTTCCAACAAAGATATGCAGGACAGCGTGAACAGGTACACTCTTGGCTGGCTGAATGCACCTCCAAACGCTTGCTGCTTCTGCTGGTGCTGTTGCTGTAGCTGCTCCTGTCTTACAGTAAAACCTTCTAAGGCAGAAAAGATTAAGGAGAAGacacatgaaaaagaaaatgaagctACAGTTGAGGAACCAGCTGGTCCGACACTACAGGAGGCCCAATCGTGGGCAAAATCATTCGAGCACTTGATTAAGAGTCCAAATGGCCGGGCCAATTTCCGTCAGTTTCTTAAGAGTGAGTTCAGTGAAGAGAACCTGTTGTTCTGGCTGGCCTGTGAGGAGCTGAAGAAAGAGACCAACAGAACTGTGGTGGAACAGACTGTTAAGCAAATATATGAGGACTTTGTCTCTGTGCTGTCACCTAGAGAGGTGAGTCTGGATTCACGTGCACGAGAGGTGATTAGCAAGAACATGCTGGATCCATCCTCACAAACCTTTGATGAGGCACAGCAGCAAATATACACACTCATGCAGCGAGACTCATATCCTCGTTACATGAACTCCAGCGTTTATGCAGATCTTATTGCAAGTTTGGAAACGGCTAAAACAGCTGAGGAGTCCTAACACACAGGCACATACAGACTCATATACATAATACAGaacctctatctatctatctatctatctatctatctatctactacacacactctgaacaaTTCAGTGAATTCTGACACTTACAGTGAGACGACTATCTCAGACAcaaatacagtcccctctgaaagtattggaagggccaattcttttgtttttgctatacactgaagacatttgggtttgagatca

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81263 lncRNA downstream 18978 21407111 ~ 21408207 (-) True G68495
TU81220 lncRNA downstream 97935 21326076 ~ 21329250 (-) True G68462
TU81222 lncRNA downstream 97935 21326076 ~ 21329250 (-) False G68462
TU81229 lncRNA downstream 106039 21320818 ~ 21321146 (-) True G68466
TU81181 lncRNA downstream 113312 21304764 ~ 21313873 (-) False chchd7
TU81290 lncRNA upstream 41052 21471632 ~ 21471839 (-) True G68519
TU81291 lncRNA upstream 42239 21472819 ~ 21473032 (-) True G68520
TU81365 lncRNA upstream 44007 21474587 ~ 21475776 (-) True G68577
TU81377 lncRNA upstream 66352 21496932 ~ 21501433 (-) True G68585
TU81559 lncRNA upstream 397693 21828273 ~ 21828833 (-) True G68740
XM_026936006.2 mRNA downstream 9357 21413861 ~ 21417828 (-) True mrpl15
XM_026937164.2 mRNA downstream 25917 21399555 ~ 21401268 (-) True sox32
XM_026936104.2 mRNA downstream 47226 21376395 ~ 21379959 (-) True sox17
XM_034304122.1 mRNA downstream 56175 21354619 ~ 21371010 (-) False LOC113539989
XM_034304123.1 mRNA downstream 56175 21363925 ~ 21371010 (-) False LOC113539989
XM_026935849.2 mRNA upstream 50035 21480615 ~ 21485813 (-) True fastkd3
XM_026935851.2 mRNA upstream 50035 21480615 ~ 21485666 (-) False fastkd3
XM_026936692.2 mRNA upstream 57607 21488187 ~ 21492336 (-) True myl12.1
XM_026935855.2 mRNA upstream 123946 21554526 ~ 21580543 (-) True emilin2b
XM_026936632.2 mRNA upstream 151642 21582222 ~ 21623632 (-) True smchd1
trnaa-ugc other downstream 8946 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578106.1 other downstream 56175 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other downstream 56175 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other downstream 56181 21368250 ~ 21371004 (-) False LOC113539989
TU81225 other downstream 97935 21326046 ~ 21329250 (-) False G68462
TU81579 other upstream 503946 21934526 ~ 21935169 (-) True G68760
TU82055 other upstream 1201605 22632185 ~ 22635752 (-) False LOC113540019
XR_004578082.1 other upstream 1863371 23293951 ~ 23306934 (-) False lrrcc1
LOC117597073 other upstream 2049385 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 2049472 23480052 ~ 23480566 (-) False LOC117597073

Expression Profile