RNA id: XM_026936261.2


Basic Information

Item Value
RNA id XM_026936261.2
length 4299
RNA type mRNA
GC content 0.43
exon number 9
gene id usp12b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13684736 ~ 13695000 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTGCACACCGGACAGGGACGCAGGTCTTTGCAGTGACAGGCGGGCGCTCCTCGTTCCGTGTCCAGCTGCTGGACAAGCGAAAGATTTTCACCGGAAATCCAGCCTTTTGTGGCTGTCACGGTTTTACAGCTGGGGTTTGGTCCAGTATGGCGGCAGACGGATGGAAATACTGATGACAGTCCGAAAGATCGCCTCGATATGTACGATGGGCGCCAATGCCTCAGCTTTGGAGAAGGAGATTGGACCAGAACAGTTCCCCGTAAATGAACACTACTTTGGTCTGGTTAATtttggcAACACCTGCTACTGTAACTCAGTATTGCAGGCTCTGTATTTCTGCCGGCCGTTCCGGGAGAAAGTGCTGGCCTACAAGGTGCAGCCACGGCGCAAAGAGAGCCTGCTCACCTGCCTGGCAGATCTCTTCAACAGCATCGCTACTCAGAAGAAGAAAGTGGGAGTCATCCCTCCTAAGAAGTTCATCTCACGCCTGAGAAAGGAAAACGAGTTGTTCGACAACTACATGCAGCAAGATGCTCATGAGTTTCTCAACTACCTGCTCAACACCATCGCCGACCTGCTGCAGGAGGAGAAGAGCCAGGAGCGGCAGCAGAACGGCAAGGTGGTACagaatggaggaggaggaggaggaagcggGAGCCACACAGGAGAGGCAGAATCAGCTGAGAAGAACCAGCAGACGTGGGTGCATGAGATCTTCCAGGGCACACTGACCAACGAGACACGCTGCCTCAACTGTGAAGCGGTAAGCAGTAAAGATGAGGATTTCTTGGATCTTTCTGTGGATGTGGAGCAgaacacatccatcacacactgtctcagGGGCTTCAGTAACACAGAGACGTTATGCAGTGAATACAAGTACTACTGTGAGCAGTGTCGGAGTAAGCAGGAGGCACAGAAAAGGATGCGTGTGAAGAAATTACCCATGATCCTCGCCCTGCACCTAAAGCGCTTTAAGTATATGGACCAGCTGCATCGCTACACCAAACTGTCCTACCGTGTAGTCTTCCCTCTGGAGCTGAGGCTCTTCAATACCTCCGGTGACGCCACCAACCCCGACCGTCTCTATGACCTTGTGGCTGTGGTAGTGCACTGTGGGAGTGGTCCAAATCGTGGTCATTACATCACTATAGTGAAAAGTCATGGCTTCTGGTTGCTGTTTGATGATGATATTGTAGAGaaAATAGATGCCCAGGCGATAGAAGAGTTCTACGGGCTGACGTCTGACATTTCCAAAAACTCAGAGTCAGGCTACATCCTCTTTTACCAGTCCAGGGACTGAGCCAATGGCAGTACGCAAATGGGATCGCTTTGGCTTTGTGAAAGTCAGGCTGAGGCAGAAGGCGGGGCTTGAGCTACGTATGCCCTGACTTCAGACCCTCTCAGCCGAGCCCCGAGTCATCCAGGTGAGCCTTTGCACTGGAGCATCCAGCAAACAGAAGGCAGGAGCAGTTGATTCCAGAGTGATGTGAGTGGCACAGTCATCTCCATCCAAGCATAATGGAAGTTTGGAGGTTTTCAATCATCGGTcatcccacagacacacactctccatcAGTAAGCTGAGTcacaaagtaaaaatatttctgatggcATACAGATGGCATATGGAAAAGGTTATGGTTTATGTGAAACCAGTGACATGGGGAGTTCTGATATTTTGGCATTCATTTTCTGCATGACACTTTGCTTTATGCTTTGTCATGCAGGTGTGTACTGTAAAAGCTAATGTTATTTTGGCACAGAGCAGATTATGATAACatcttgaaaaggttgtagatGCTCTCTTTCTCTAGACCTTCATCTGCTGTGAAAACAGGCCACACTGTTTGGCCACTAGGTATCCGACTATTTATGATCATCTCTTATAACTAGAGTAGGTTTCACAATATCATGTTATATGTGGCAATAATATGATGCACCTCTGCTCTATCTCGGTGACCTGGTTTGGCTGGTTTAGAGtcatattattttacaaattgttTTTCTCTGGAAAGACGTAAGAAATCATTCACAGGATGTTCTTTGGAAAAGAAGCCTGTGGGTTGCCAGCGTGGATCAGAGAGGATCACGGGTACAGGCACAGTGCCGGTACTGTGGTTTAGTAATAAGCTTGGTTTGAGTTTAGCTTTTGGGATTGAGCCATTTACATTAAGACAAGCGAATGCAGTGCTTTGATTGTCATGGAGTGCACACTTGGTGGAACACACACTACGGCAGTGTGCACTTTGTAGATTGTAATGTAAAACTTGGATTTAGTAATGGTACACTTGGATACAAAGGCATCACTTGATTATTTATTGCTATTGCTGAATAGTCCTGTGTTGATGATTCATTTCAGTGAGAGAGTTTGTTTCTCAAGGGATCCAGACTTCGCATTTAAAGACCTGGGTAATTCATGGCTTTAAATGAGTAGCTAGAATCTTGTACTGATTATCTCCAAGCCACAGTTCTCCCCTTCTCTTTGTACTCAGTAAATATTTAACTGGATGTCTGTGGAGAAAGGAAGTGAAGCAAAGCATTGCAGGTCATTTTTTATGGTGTGACCAGAAACATGTTCCCAGAGCAGTCAGACCAAATGTTGTTCTGAAAACGCAAAAGTGAAGAGTTATGGGTCGTCAGAACAGCTAAATTCCCCACAACAAACCATGTCTGGATTTCACAAAATCATTGAAGTGCAAAGAACAGTGTAGTCATGTGACAATATGAGCTGTTTTTAATGCTCATGTGCATTTGCAGTAATCCCAGTTTGAGATCATTGTAGCATAGATACATTTGGTAAATGTAGCTCCTGGTTGTTGTggagttgttttttgttttttgcagctTTGCTAGTAAACATGTCCAGTTGCTGACATTAAGGGGGTGTCGGAGGCGAGTGCTGTTCCATTCTGCTGGTTCCCAGCTGATTAATCGGCTCCGTGAGCCGACCTGTGGATTATAAACATGTCTACAGGAACATGCACATACCAGACTTTTCAAAGAGTTGTTAATCTTCCACTGACTGAGAAAGGCACAAATGCCCTCATAACAACCTTACAGCTTAATAGCATGTTTTAATTTACTTCCCCAGTCCATTGTTTGTTCATTCAGACCTCTTCCCTGCACATTAATATtggctcagtgtgtgttgtCACTGAGATATGGGCTCCAGGAGAATTTCAATGAACACAATTGTTTCTCATTGCTTCTCATTTCACTTTTTCCTTTCGGACTACTTACCTGTGAGGGTTAAAAACTGACTGTGCTGCTGTCTAAATTCCACATATCATATAGAAATATGtattacagctgttataaagcttgtataaatgttataaatggaTAGTAAGAACAGAAATTTTGCAGATGTTGTTGCCACactttaaaggaatattccagtgtttttcaaaaCCCAGTACCTATCATATATGTGCGATTAACATGGACAAGAACTCTTGACACGtttctctgtactgagaaataaaaatcaaaccTGTTTTATGAAACTAATTTCTattggaagtctaagggcagttatTCCAGAAATCTTTGTTAATTTCTCACTTCTTGTCTGTAGTaaatgcacatgcactgcataTCTAGGGAGATTGGGGGGGGAAACACTGCGAAATGCCTTTAAGGCATGTGCAATTACGTACACTGACGTAAGGTGAAATGCcgtatttataacattttatacttCTTTTATAGCAGTCTTAATTGATCTATTAACATTGAAACTGCTAATGCAGtaactgaatattttatatctCCAATTTAAGTAAACAGAGGAATGGAAAGAGGATGAGGCTGAAAGTCTTTTGTCTAGttcataatttatataaaactctaggtttatattttcttatatatgTTTCGCTAATTATTCTTTCATACGGAATGCCACTGGTGCCGTGGACTTGAGGAAATTGTTGCTACAGAAATGTATGATTAGAAATGTATGATTCTTTTCAGAAATGCTGTTACCTGCATCCCTatgattgttttgtttaatgACACATCTAAGCACTGATCATAGTAAATGAATGTTGATTTAGATTTTGCTTTAAAAGCCAGATTGCAAATGTCAAGCGCAAGCCTGTGTAATGCAGCACCGGAGTTCTGTGAGTCATGTGACCGCCCACACCCCAAACCACTGCCCGTCAATGTTGCACTTTTGACAATGTacagattgtaaaaaaaaaaaatggttaaagacTGAGATTTGAAGTGTATGGACTAAATGAAAGATGGTGTTGGTTCccaataaaagcaaaaaaaaaaaagacatcaa

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75988 lncRNA downstream 115139 13564633 ~ 13569597 (-) True G64147
TU76015 lncRNA downstream 129659 13554864 ~ 13555077 (-) True G64164
TU76014 lncRNA downstream 130390 13554088 ~ 13554346 (-) True G64163
TU75699 lncRNA downstream 217334 13450437 ~ 13467402 (-) True G63907
TU75701 lncRNA downstream 218018 13447955 ~ 13466718 (-) True G63908
XR_004578000.1 lncRNA upstream 21325 13716325 ~ 13723916 (-) True LOC117597078
TU76107 lncRNA upstream 43589 13738589 ~ 13743598 (-) True G64222
TU76151 lncRNA upstream 174009 13869009 ~ 13872279 (-) True G64261
TU76137 lncRNA upstream 183030 13878030 ~ 13880728 (-) True G64252
TU76160 lncRNA upstream 193688 13888688 ~ 13890217 (-) True G64267
XM_026937076.2 mRNA downstream 151472 13527886 ~ 13533264 (-) True cnpy4
XM_026936111.2 mRNA downstream 163210 13505741 ~ 13521526 (-) True ntn5
XM_026936415.2 mRNA downstream 244216 13437087 ~ 13440520 (-) False zgc:194312
XM_026935899.2 mRNA downstream 294771 13388333 ~ 13389965 (-) True si:ch73-335l21.4
XM_034303430.1 mRNA downstream 376258 13289976 ~ 13308478 (-) False acap1
XM_026936327.2 mRNA upstream 52239 13747239 ~ 13797445 (-) False col4a5
XM_026936326.2 mRNA upstream 52239 13747239 ~ 13797445 (-) True col4a5
XM_034303949.1 mRNA upstream 58798 13753798 ~ 13797445 (-) False col4a5
XM_026936919.2 mRNA upstream 217683 13912683 ~ 13967911 (-) True sema4f
XM_026936736.2 mRNA upstream 323458 14018458 ~ 14033040 (-) True dok1b
XR_003404098.1 other downstream 480274 13204273 ~ 13204462 (-) True LOC113540725
TU74901 other downstream 1407067 12272372 ~ 12277669 (-) False LOC113539775
TU74900 other downstream 1407124 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other downstream 1407124 12272372 ~ 12277612 (-) False LOC113539775
TU74889 other downstream 1435680 12247274 ~ 12249056 (-) False si:dkey-165a24.9
XR_003404087.1 other upstream 208831 13903831 ~ 13904021 (-) True LOC113540713
XR_003404068.1 other upstream 212837 13907837 ~ 13908000 (-) True LOC113540694
XR_004578131.1 other upstream 214167 13909167 ~ 13909357 (-) True LOC113540747
TU76338 other upstream 537809 14232809 ~ 14243681 (-) True G64436
trnae-cuc_13 other upstream 1039656 14734656 ~ 14734727 (-) True trnae-cuc_13

Expression Profile