RNA id: XM_034303435.1


Basic Information

Item Value
RNA id XM_034303435.1
length 2020
RNA type mRNA
GC content 0.47
exon number 6
gene id and2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23318535 ~ 23322611 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTTAAAAATGTTGCTCTCCACTGTCCACAGGGTCTTCAGGGGAGAAGAGAGCTTGGATGTAGAGTTGATTACGTTCCCCCTGCCTGCCAGGAGCTTAGACCACTTGGGCTGAAACAGaaatctaaTCCACAGAGCTGTAAAAATGGCCAGAATCAAGCTGTCTTTGCTGTTTGCTGGCATTGTGCTTGCAGTCATCTTAATGCCAGATTTTCTTGGGGCTGGTCCAGTGGGGCACCCAGAACAGGAAGAAGCTGAGGTTGCTGAAGAGAAGCCAGCCATCTCATTAGCCCTGAAGAAACTGACACGTAATAAGAGGAATGCTGTTGCTTACTACAAACGCTTGCCTGAATTCTGGGCCTGGTACAAGTACTACATGAGCACCCACAACCAGGAGGGAATTGAGAGTTTGGACCAGCTCTACTTGATCTACTTGCAGAACAAGCACCGGGTTGATGGGGACAATTCCTACAAACATTACCTCACCCACCTGAGTGAGGTCTACAAGGCCTGTGCTAAATCAGATGACCCTGACTGCATTCCAGAGTACACCAGCAAGCCCACGGCTAAGATTGTTTTGCCTGCTGCCATGAAGCAAGCTCCAGTGAATGTGTGTAACCCATATCTTGATCCCTACTGTATCTTTTCTGTAGGTCCTCAAGCAGCACCTGAGGagcctcctcctgctcctgtttCAGTTAAATCCCCCAGTCCCCTTCTGCTCCCCTCTCCCATAAGAACCCCATCTGGATACCATTACTATGCCCCAGCATTACAACCTTTTCTTTCAAGTGAACAGAGAGCTGAGCTGCTCCGGATCTGCAGCCCGTCTGATGTAGAGTGCTTGCAGTATCACTTGCGTGCTGCTTATGGTTATAGACCTGCTCTTACCCCAGTGCCTTCCTATGCCTACCTGGGATGTGACCCATCTAAAGACCCTTACTGCAGGCCCACAATGCTAGCCAAGAATCCGTCAGGTCTGTATCATGTATACCCTCATTGTAATCCCGCTGTTGACCCTCTCTGTGCCAGTAATATAGCCCCAGCTGCCCAAAGTGCAGAGGAGGCTCCTAGGGAGCAGCACTGCAACCCGCTGTTTGAAACGGGGTGCAACCCACTCACTGCTAACAGGCTGGTCACACTTAAGGCTCCTGTGCTGCAGTATGTGCCACAAGGTGAGCTGACTCCCCTCCACCTAGCTGccttaatgaaaccattaccgATTAGCCAACAAGCAAAGTCCAGTGCCACAGAATGCCATCCATATGACCCCAGCTGTAGCAATTTTTCCCCTCCGGCTTCCATTGAGGCATTCGAGAACATGCAGGGTGGCATCATCTTACCCCATCCTGACTGTGATCCTGAAACTGACTACAACTGCCGTCTGCGCCGTGCAGGACCCACAGACAACAAAAAGGCAGCTGAGGATCCCAAGGATGAGCTGGAACGTGGTGATGACACCAGCAACGCCAATGTAGCACCACAGTACCAGGTCTCACGATTTGAGGATTTCCTGAGGGGATACCTGGGTCACTATAAGAAATAAGAGGACATGCCATTATCTGAAAAGCTTTAACACTCAACCCAAGTGTAGTGTTTCAAAAGGAACTCACAAACATGCTAAAGTCAACAGAGACCTCCTGGTAATGAAGCCAGAGCCCACACTTCAGAACAGTTCAGAACAGGAGAAGAAGGCCTGTGCTTTATAGGGATAATTTCAAATCAGTACTTTCTGAATTTATGTGTATTGCAAACTCTGAGGGGTTTATTTGAATATGGGCAATGCACTTTGATTTTCTAGTCAAactattatttttctgttttgtacaTTGTAATTCTAAGTCCATGCTCTCCAGAATGAAGTGCAAGACTGGCTTGCCAAAACTGGAATTCAATTTATTCCTTCAAATTTACAATACACCATCCATGTTTGAATTGTGAATGATATTTCATTACAGCCCTTTGAAGATGCTCAGTTTTTTAATATCACTTATTGCATGAATAAAGTTATTAAATCAAAA

Function

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0033333 fin development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82439 lncRNA downstream 39753 23278575 ~ 23278782 (-) True G69503
XR_004578004.1 lncRNA downstream 44921 23272162 ~ 23273614 (-) True LOC117597081
TU82235 lncRNA downstream 263152 23054514 ~ 23055383 (-) True G69320
TU82146 lncRNA downstream 509286 22808906 ~ 22809249 (-) True G69254
TU82140 lncRNA downstream 512627 22803386 ~ 22805908 (-) True G69248
TU82468 lncRNA upstream 8421 23331016 ~ 23331535 (-) False retreg1
TU82494 lncRNA upstream 74069 23396664 ~ 23397963 (-) True G69551
TU82581 lncRNA upstream 130638 23453233 ~ 23454221 (-) True LOC113540115
XR_003403997.2 lncRNA upstream 130745 23453340 ~ 23454204 (-) False LOC113540115
XR_004577997.1 lncRNA upstream 130745 23453340 ~ 23454204 (-) False LOC113540115
XM_026935797.2 mRNA downstream 11601 23292049 ~ 23306934 (-) False lrrcc1
XM_026935796.2 mRNA downstream 11603 23292048 ~ 23306932 (-) False lrrcc1
XM_026935795.2 mRNA downstream 11603 23292049 ~ 23306932 (-) True lrrcc1
XM_034304031.1 mRNA downstream 26537 23285036 ~ 23291998 (-) False e2f5
XM_026936871.2 mRNA upstream 8422 23331017 ~ 23346573 (-) True retreg1
XM_026935903.2 mRNA upstream 53861 23376456 ~ 23382888 (-) True nol7
XM_034303846.1 mRNA upstream 86819 23409414 ~ 23418890 (-) True LOC113540008
XM_034303847.1 mRNA upstream 107705 23430300 ~ 23442743 (-) True LOC117597115
XM_034303848.1 mRNA upstream 124210 23446805 ~ 23463725 (-) True LOC113540011
XR_004578082.1 other downstream 11601 23293951 ~ 23306934 (-) False lrrcc1
TU82055 other downstream 682783 22632185 ~ 22635752 (-) False LOC113540019
TU81579 other downstream 1383366 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 1900296 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578105.1 other downstream 1947531 21368250 ~ 21371004 (-) False LOC113539989
LOC117597073 other upstream 157370 23479965 ~ 23483850 (-) True LOC117597073
TU82584 other upstream 157457 23480052 ~ 23480566 (-) False LOC117597073
TU82579 other upstream 170784 23493379 ~ 23493919 (-) True G69592
LOC117597074 other upstream 172440 23495035 ~ 23495897 (-) True LOC117597074
LOC117597075 other upstream 173362 23495957 ~ 23497021 (-) True LOC117597075

Expression Profile