RNA id: XM_026936270.2


Basic Information

Item Value
RNA id XM_026936270.2
length 8144
RNA type mRNA
GC content 0.45
exon number 34
gene id plcb3
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14157436 ~ 14220288 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggccggGTTGAGTGTGTTTAAATCATGCTGTTTTACCCGTCAGTGCTGCGCCATGGAGGCAGAACCCGCCTCTGCGAGAGAAAAGGAAAGTAGCAGTGACAAACTGTAAACGATAGCAGAAGAAGACGAAGAAAAGAagggaaggagaaagaaaagcagcacTCCCTCGTCTGTTCGCTTTACTCACTCACTTCCTCACctcccccgtctctctctctctctctctctctctctccctgcccttcactcactctctccctctgtctctccgtcGTTCActtcaagaagaaaaaaaaaaccatgaaggAAAAGGAAGGCCACTTGGCCGGGCGCGTCGGAGTCGAGTGAAAGTTTGTGGAAGGATAGAGGAAGCAGGAGGACGTGGAAGGGAAGGAAAGGCGCAATTCAACCGCACTACGCGAATGAAGCGAGCATATGGAGTCATAAAGTGTAACCGACTGTAAGAGACTGGAAGCAGCTCGCCTGCTCGTTCATGTGGGACTCCGAGCTGAGCGGCTCGCGCACACTCGCTCTCCTGCCTCTTTCCCCTCAACTTCGTGCAGTCATCACCGGAGTCGGAAACTCGCGTCAGGTTCCCTCTCAGaagtgtgcgtgagtgtgtgagctgagGATCTGAGAGTGTGAGCTGAGGATCTGAGTGTGGCTCTGAGGAAGACGAGGACAGGCTGTTGTTGCAGCCATGGCCGGGGCGAAACCGGGAGTGCACGCGCTCCAGCTCAAACCGGTCTCCGTGCACGAGATCCTCAAAGGGGGAAGCAAGTTTATCAAATGGGACGAGgagccCAACAGCGGCCAGCCCACTCTGGTCACCCTGAAAGTGGACCCTGAAGGATTCTTCCTCTACTGGTCCAGTGGATCAAACATgGAGGCCGAGATTGTGGACATCAGCCATATCAGAGACACCAGAACGGGGAAGTTTGCCAAGATACCAAAGgactggCGTGTGCGTGAATGGCTGGGCTTTGGAAAAGGAGAGGGCAATGTGGAGGCTAAGCTAGTAACAGTCGTCTACGGCAGCGACCTGGTCAACATCAACTTCCTTAACTTCCAGGCCATGCAGGAGGACATTGCCAAGGTGTGGACTGAAGAGCTGTTTAAACTTGCTACAAACATACTGTCCCAAAACGCCTCACGCAACACCTTCTTACTCAAGGCATACACCAAGCTAACGCTGCAGGCAACCCAAGATGGGAAAATCCCACTAAAGAATATTTTAAAGATGTTCTCTGACAAGAGGCGAGTGGAGACAGCGCTGGAGCAGTGCAACCTCATGGCTAACAGGGCAGACGGGATCAAGCTGGAGGAGTTCACCTGGGAAAAGTTCCAGAGCTTCTTGAACAACTTGTGCCTGAGGCCTGAGATCGACCGCATCTTCGTGGAGCTTGGCTCTAAAGGGAAGCCCTTTCTATCCCTGGATCAGATGTTGGACTTCATCAACCGTAAGCAAAGGGACTCACGGCTGAATGAGGTGCTGTACCCACCTCTCAAGCGTGAGCAGGTACGACAGCTCATGGAAAAATACGAGGCTAACGCCCACCAGCTGGAAagagaccaGATCTCTCTAATGAGTTTCAGTAAATATCTGGGAGGAGAGGAAAATGCAGTGGTTCCCCCTGAGAGGTTCGACATCATGGACGATATGAACCAACCGCTGTCTCATTATTTTATCAACTCTTCACACAACACCTACCTCACAGTGGGTCAGTTAACAGGTCTGTCCTCAGTGGAGATGTACAGACAGGTTTTGCTCACCGGTTGCCGCTGTATCGAGCTGGACTGCTGGAAAGGTCGTCCACCTGATGAAGAGCCCATTATCACACATGGCTTCACCATGACAACCGAAATCCCCTTCAAGGAGGTGATTGAAGCCATTGCCGAGAGTGCCTTTAAGACCTCTCCTTACCCCCTCATCCTCTCCTTCGAGAATCATGTCGACTCCGCACGGCAGCAGGCTAAGATGGCGGAATACTGTCGTTCTATATTCGGTGATGCATTGCTCATCGATCCTTTAGAGAAATACCCGCTGGTCCCAGGTCAGCCGTTGCCCAGTCCTCAGGAGCTGTTGGGGAAAATCTTGataaagaacaagaagaaacaTCACCACCGCACAGCTAACGGAGGCAGCGTCAGACGCAAGGAGGGAGCAGACGAGCAGGCCTCGTCTCTGAATGATGCTCCATTGCCTGAAGTTGAGACAAGCCAGATCATGTCCAATGGGGGTGAGAAGCTTGCAGAGAGAATGGCCAAAGACAGTGACATGCGGAAGTCCATTGATCGGGGAGATGGAGATagtgaagaagaggaggaggaagagccAGTGACAGACCCCAAAAAGCACCATTCAGATGAGGGAACAGCGTACAGTGAAGTCAATGCTACAGAAGAGATGTCCACGCTGGTGAACTACATTGAACCAGTCAAATTCAAATGTTTTGAAGCAGCAGCCAAAAGGAACAAGTATTTTGAAATGTCATCCTTTGTGGAGACCAAAGGCATGGATACACTGAAGAATTCCCCAATTGAATTTGTGGAatacAATAAGAAGCAGCTGAGTCGGATCTATCCCAAAGGCACACGCGTGGACTCCAGTAACTACATGCCTCAGCTGTTCTGGAATGTAGGCTGCCAGATGGTGGCACTAAACTTCCAGACTCTTGATCTGCCCATGCAGCTGAACATGGGTGTGTTCGAATATAACGGCCGCAGTGGCTACCTTCTCAAGCCTGAGTTCATGAGGCGCACAGACAAACACTTTGACCCCTTCACTGAGAACATAGTGGATGGCATCGTGGCTAACACTGTCAAGATCAAGATTGTGTCTGGTCAGTTTCTGACTGATAAGAAGGTGGGTGTGTATGTTGAGGTGGACATGTTTGGACTGCCTACTGACACCAAGAGGAAGTACCGCACCAAAACCTCTAATAACAACTCCATGGACCCAGTTTGGGAAGAAGAGCCTTTCGTCTTTATTAAGGTGGTGTTGCCCACACTAGCATCACTGAGAGTAGCTGTCATTGAAGAGAATGGGAAGTTCATAGGCCATCGGATCTTACCAGTGGTGGCTTTACGTCCAGgataCCATTACATTAATCTGAAGAATGAGCTCAATCAGCCACTCCTGCTTGCCTCTCTCCTTGTATACACTGAAGTTCAGGACTACATTCCCAATGAGCACCAAGagTATGCTGAGGCTCTGACCAATCCAATCAAGCATGTGCTGGATCAGAGAGAGCGGCAGCTGGCTGTGTTCATGGAGGACAACAACGAGGTCAGTAAGCGCGTCCACGTAAAGCCAGATGAAGGAGAGAAACCAGATTTCAACCCTCTAACTAATGTTGAGTACACATTCAGTTTGCCCTCACCAACCCTCCCACCTGTGGTGGCTGAGGTATTGACTGCTCCAGCCCAGAAAGAAGACCTGGTCCTCAATATATTAACAGTGATAGAGCCGCAGTCCATTGAAGAGCTGAAGCAGAATAAGTCCTATGTGAAGCTGTTGAAGAGACAGTGCAAAGAACTGAAGGAGCTCCGCAAGAAGCACCTCaaaaaggtgtgggCCCTCAGTAAGGAGCAGAAGATGAGGTGTAACCAGCTGAACTCGGACATCCAGAGACGCAAGAGTCAAGTGGAGAAAAAGCTGCGGCTCAGCGTGAAGAAAAAtgAGCCTGAGGAGCCTGTGAGGACTGAGCTGAGTGCTCTGCAGGTGGAGCTGGAGAAGCAGACAGTGCAGCTGAGAGAGTGGCAGATGCAGGAGCTACTTGAACTGCGAAAGAAACAACACCAGctggaaagagaaaagaagtaTGCTCATCTTGAAGagTCGTTTAAGAAACTAAAAGTTGTTGCTGAGGAATGCCAGATAGCCCAGATCAAGAAGCTCAAGGACATATGTGACAAAGAGAAGAAGGAGCTGCAGAAGATTTTAGATAGAAAAAGGCAGAACAGCATCATTGAGGCCAAGAAGGGAGACAAAGAGAAGGCTGAGTCGGAAGTGAACGAGATAAATAAGAAACATATCCAGGACTCCGTGAACTCACTGCGCAAGTTGGATGAAACTCAGGAGAAACGGCAGGAGAAGCTGAAGAACCAGCAGAGAGAAATCTTACAGAAAATAGACGAGGAGCAACCACTGCACCGGCTGCGTTTGGAGCGCGACTGTGACGCTGAGCTCGAGCGCTTACCAGAGGAGATCTGCCGCTACCTGCAGGGCGAGCTAGAGAGCAAAGGCCTGCGCAGCGATGCCCTGTTCAGCCAACTGCCCAACCACGACAGCGCAGGCTCGGGCCCACCCTCCAACTGCAGCACGCCCCCGTTCAACTCGCCCAATCACAACTCGAGCCTGGACAACAGCACAGCCTCGCTGGgcacctcctcatcctccagcACCATCACGTCCGATTCAGAGCTTACGGCCATCTAATTCCTACCTTCTCACTCTGTCCTGTCATGCTATTTCTCTCACTGGATTGTGGTGATAGAAGTAGTATTACTGAAaggtgtttaaatgtttttaaaggatttcagcaatgttttatttttcacataccCCCTTTAAAGTCTGCaccttttttattgttttttttttttttttaattaaagttctCTTGGATTGTTCTTATGCTTTAACCATAAAATATATACCCATGTCTGTGTTAAGCACTTGTGGAATGGAgggaaagctttttttttttttttttaaacaagagagactattatttatttctgtggtaTGATGGGATGTGAGCTTTAACTGTAGTGCTCTGCATTGTACTGCAGGTGGCAGTGTGGCTTTAGTGGTAGAGTGACTTTAGTGACTCGGCGATACAAACGCAAGGCGTAATCTGAATGGTACTTGTTTACATAATAATGCACAGATGGGCAATCCTATAAGCCAGGCCATCATCTCTCCTCCCTATGGGACTATAAAGTTAATTCCCACTGCATATTTCTGCAGCATCCGAAACACATCATCGTAattgatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagcaagAGAAACATTACGGAGATGATGAATATTGTTTGTTTTCCAGTAATGCATAGTTCCCCCTCCCCCTGTCTCCCCTGTCCTCGTTTCTTCCCCCATTACTCCATCTATATGTGTCTCTCCTTCcctacagctgtgtgtgtggtgtggctTAATCTAATCCTTGCTCTAATTCTGTGTGTAATTGGTGTGCCAATCCCATGCACTGCACATCCAAAACCACTACTGTTCAGGAAACTGGACATGGTTTCTGATGTTCATGTCAACTATTCACACTCTTGATGTGCTAAATCCTGGCGCTCGGTTTAATAGAATGTGAAGCTATAAGAGTGTGTGGTATCAGGGGTCAGGTGTAGCCAGAATGATAGCCATGTTAGTAAAcatacatgaatgtgcagtatgtgtgtgtacttttacAGGGTTCAACtcattttagaatttttatggTATTCGTGTTTTAGGTTTGGTCTCAAATGGATGTCTGATTTTTTCTGAACCCGTAGTTCatcttcattatgttttcttcttcttgctggCAATTCAAGGAGGCTCCAGAGAGGGCAGGTCAGATTTCTTCATTGGCCTCTATAAATGAGGGCTCTGAATCTGCCAAATGACTTGTTAGAATTGCACTTTTGAATGGAGCGAGGTTGTTTAtcatgaatggaaaaaaaataaaccagtgGGCTAGAGAATCGCAAATGCAGCTTCAACACAGACATGTTTTAGAAAACGAGGGATACATCAATCCAACATGGGGATGATACTGGCTTGAACCTATGGATTAGTATTGAATCGGATTTGACATACTTCCCCATCTGTTCCACTCATATTTATACTGATCACGCCCTGTCGTGTTTCACATCACATtgcaacagattttttttttttttcagaaaatcagCTTGTTACTTAGAGCATGCAAGTATCAGATTGGTTAAAAAttgatgtgaaaatgaaaaatgggaAGACCTCTGGAAATTTTAAGCTAGCCAAAAATAATTTCTGACAATACATTGATTACAATCTGTCTCATGCTAGTACATGCTTTGCACATATTTTTCGCTTGCATAGTAAAGCAAGTGTCTAGACTAAGTAGTCTTTCTAGCTGAGTCTCTATTTCCAACCTGTGAGCACACTTTCATTCCCCAACATCCCTCCGTCTTTTCCTCTTTGTCCTCAGTGATTTTCTCTTGCTTAGCAGAAACCATGGATGCGTTCTGACTCATGGACACCTGGCCGAGCTCCAGTGTGCTCTCTAGGCTGACACTTCCACTTTTCCCACTGTACCAAATGCAAAAACAAGCTGGTCCATTGCTTTTTAATCACAATCTAATAAGCACCTGTAACACAGTGACACGCTGAGTGTGATATTGGCCCTGATGGAGCACTTGCACACTTCATTATGAGAGAATGATCAGACATTGCAGCATGTGTGATTCTAAGCGGTGATGTGCACAATTAGTGTTAGTACCTATTACCTGGTCCATTTGACTGGGATGGCAAATTATTGTTGAGTAAATAATGTGGCTATAGGCAAAGCAGAGGTGCTATTCTCTGATCGGACAGCCGAGTTGGGACGGTGCAGGCATTACCAGCTCACACTGAGAGGGAAAACTCTGAGATTTTTTGTCTCAGCTTGTTGTAAATTTAGCAGAATATAGGGTGTacactgtgtgcgtgtgtgtgtacgtgtgtgtgagagagagaatgtatgAGGATGCATGCAGTGGAGCGCTTGAGCTCTACAGACCACCTGAGGTTTTATCATGTTAGTATAGAgtgtttaaagctttaaagttcTAAACAGGAGCAATGGTACTTCTTGTAAATTGCTGTCTAATGATGTACGATGAGGATCATTGTTGTACATGTTGATAATATCAAAAAAGACTTTGATTTGTGTATATGATATGGTCGAGACATGGGTCGTTATGACAGAATAGTgaaatatcaatgattacagtGTGTCTGGATCATATTAATCAGACGTACGTGGTTTTATGTGTATTCTACTACTGACTAGAGTCGGAGTTAAGGGTAATGtcagctgtgtgtctgtgtgcgttcttgtgcatgtgtttttatatgtgaTTAGAAACTTCATGGGATGTAAAAGATGTCAGACATCTATGCGTTTGCCCCTGAGTTTCCACTGAgacacatatatgcacacacacacacacacacacatactctgaTCATTTCCTCAACCCCTCAAACTGTCGtctgctgcctgtctgtctgtctaagcAGAAAAACACCTCGTTATGAGCACTCGAACATGCTCATTtaacagttttattattttgctcatttatcTCAAGTTGTATGTGGCACAGCTGATATTCATCCTTTAACTTGGTCCTCACTTCACCTCACCTCTGTATTTAACTATGCTAGTGACACTAAAGTGAGCATGTTTTTCTTACAAAGTGAGGACCTTGtaaatcttttacatttttatattttatgacagttccCTAAAATCATTCATactcatatttacatatttacccATGTCCTCATTGgtgcacttttattttctttttgttttttcaccttTTATGTATTAGAAAGATATTACaagcagatttttttatattgatcCTTTAGATCCAGGTACAGTAGTCGGTACAGTGTGCAAGTTAAAATATTTGAGTTTTAATTTTGCCCAATGATTACTTTGTCTTTAAGAGAGAGCAGGGGTTGACTAATACTGTGGCATTATTTCTATTCGCTAAACATGGAGTTTAGTGCCACAGCACATTCAGCTTGTATGGTGAATATAAACACTTTGCCAAGGGCTAATTTTATTTCGTCTCAATTTGCAGCTTTAACCAAGTATATGTGgtatttgtctttctgtctttctgcttttccctctctctctttccattatTACTTTCTTTCTGTATCTTTCTTACTGAAACACTGTATGTAGAGAAAGTACTGCTCTGCCTTGTGAAAGGGAAAATCATTACTCTGGATGTAATTTTTATTGCCTCGATAAATGATACACTTAACTGTACAttcaataaataacaaattttgtCAAGATATTTAGCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76186 lncRNA downstream 116148 14040666 ~ 14041288 (-) True G64291
TU76201 lncRNA downstream 140486 14016595 ~ 14016950 (-) True G64305
TU76191 lncRNA downstream 157753 13998735 ~ 13999683 (-) True G64296
TU76189 lncRNA downstream 161037 13992571 ~ 13996399 (-) True G64294
TU76141 lncRNA downstream 245616 13902924 ~ 13911820 (-) False G64252
TU76343 lncRNA upstream 30328 14250611 ~ 14253763 (-) True G64440
TU76369 lncRNA upstream 75211 14295494 ~ 14295699 (-) True G64461
XR_004578094.1 lncRNA upstream 401753 14622036 ~ 14632753 (-) True LOC117597192
TU76798 lncRNA upstream 641641 14861924 ~ 14862199 (-) True G64860
TU76869 lncRNA upstream 746924 14967207 ~ 14968539 (-) True G64929
XM_026936443.2 mRNA downstream 70455 14079705 ~ 14086981 (-) True cct7
XM_026936012.2 mRNA downstream 103401 14041951 ~ 14054035 (-) True LOC113539907
XM_026936736.2 mRNA downstream 124396 14018458 ~ 14033040 (-) True dok1b
XM_026936919.2 mRNA downstream 189525 13912683 ~ 13967911 (-) True sema4f
XM_034303949.1 mRNA downstream 359991 13753798 ~ 13797445 (-) False col4a5
XM_026936435.2 mRNA upstream 78614 14298897 ~ 14503829 (-) True pcxb
XM_026936677.2 mRNA upstream 428665 14648948 ~ 14674373 (-) True rell1
XM_026936676.2 mRNA upstream 428665 14648948 ~ 14674358 (-) False rell1
XM_026935900.2 mRNA upstream 456160 14676443 ~ 14680843 (-) True rwdd
XM_026936639.2 mRNA upstream 553715 14773998 ~ 14809361 (-) False lrch4
XR_004578131.1 other downstream 248079 13909167 ~ 13909357 (-) True LOC113540747
XR_003404068.1 other downstream 249436 13907837 ~ 13908000 (-) True LOC113540694
XR_003404087.1 other downstream 253415 13903831 ~ 13904021 (-) True LOC113540713
XR_003404098.1 other downstream 952974 13204273 ~ 13204462 (-) True LOC113540725
TU74901 other downstream 1879767 12272372 ~ 12277669 (-) False LOC113539775
TU76338 other upstream 12526 14232809 ~ 14243681 (-) True G64436
trnae-cuc_13 other upstream 514373 14734656 ~ 14734727 (-) True trnae-cuc_13
trnap-ugg_2 other upstream 1655544 15875827 ~ 15875898 (-) True trnap-ugg_2
XR_004578098.1 other upstream 1659188 15879471 ~ 15904355 (-) False tbc1d19
XR_004577994.1 other upstream 1753296 15973579 ~ 15991885 (-) False smim20

Expression Profile