RNA id: XM_026936280.2


Basic Information

Item Value
RNA id XM_026936280.2
length 3340
RNA type mRNA
GC content 0.38
exon number 8
gene id kcnip4
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18243517 ~ 18381509 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCATTCAGCAGCATTCCGCAGAAGTTGGAGCGCGCGGGAGAGCGCAACAGTGCGCGTGCGGTGCAGCCCTCGCCGTCTTTAATGTAGCTTCAACACAGCAACGTCTCAGCAAATAATGGATGCAAAGATAACGGAGAGCAGCAGTCGTGCCCGGGTAGCAGCAGAGAGTTCAACGAGTGACAGTGCTGAGGATGAGCTGGAGCTGTCAGCCGTGCGCCATCGGCCTGAAGGCCTGGAGCAGCTGGAGGCCCAGACCCGCTTCTCTCGCAAAGAGCTACAGATTCTCTACCGTGGCTTCAAAAATGAATGTCCAAGTGGTGTGGTCAATGAAGACACATTTAAGGACATTTACTCACAGTTCTTTCCACAAGGAGATGCATCCACATATGCACATTTTCTGTTCAACGCATTTGACACAGACCACAACGGCGCAGTGAGTTTTGAAGATTTCGTAATGGGCCTGTCTATACTGCTTCGAGGCACAGTTCAGGAGAAACTCAACTGGGCATTTAACCTGTATGATATTAACAAAGATGGATATATAACAAAAGAGGAAATGTTAGACATCATGAAAGCCATTTATGACATGATGGGCAAGTGGACATACCCTATTCTTAAAGAGGAAACTCCAAGACAACACGTGGAGATATTTTTCCAGaaaatggacaaaaataagGATGGCGTTGTCACCATAGACGAGTTTATAGACTGCTGCCAAAATGATGAAAACATCATGAGATCAATGCAGctttttgaaaatgtcatttaatagcTGAGTGGACAACATACCTCTGGTGGCTAGTCGGCTCATGCAAGCACCTTTCTGCTCCACGTGTGCCGATACCTTCATTAAGATAAATGGATTTGAATGGATGGCAAACACTCAACCCAGAAAACACCATTCTTTTGGGTTCAAgccacatttcatttcacttcattacAGCTCCTCTTTAGAGGTCATGGTTTTAATTAACGATTTACAACAATTGCCATTTGAAAGGTTTTTGTGCATGGGGTATACTGAACACCGCCTACATGGGAGGTCATGCTGGAACGGATTACTTTTAATCTCCCAGCCATGTTCCATTAAGTGTTACCAATAATattgaaacaaaatgaaaatattgtttTCATTACCTCTTACAGCAGTAGCATTTATTTCTGCCCTTAATCTTGTGAGAAAGACTGGGAACATTAGTCTCAGTCAGTTTTAACTATGTACTGCAGAGAGCATGTTTTATACACATAGTGCATGTGGAATCAATTTTAAGGTTTGATTTActataaatctgtaaataagAGCCACAACAGATACGTTGGTCCTTCggtttgtatgtttatatatatatatatatatatatatatatatatatatatatatatatagacaatggagaatcctttttttaaaagtgtacacTGAATATTTCTAGTTTCCAActttattcatgaatatttgccAACCATATCAGAGTAATAACAAAATATACTCAATAAGACGTTATGTCATCATTTTTTAGATTTATGTTTTGGGTAACTGTAGTACTATTCTTAAAACAACGGTATTgcagtttggttttatttactaAGATTCTAACATTGTACCAAGTATAGAGCACTATTTGAGCCGTACagtatttgatttgattcatgaTCCTTAtgacagagtgagtgtgtgtgtgcgtgcttagAACTTAACATTCAAAGGCAGAGGAGAGGCACTAATTTGTGCAAATTAAGTGTCTTTAATTTGGACTTACACTTGAAGTAAATTTTTGTTCTATTTCTAGCCAATTCTGGCATAGGAACAATGAACATTGCTGCTTTTTCATTGCATTATGTCGCAAGCTACAAGCTACAAAGAGCATCCTTTCATATTTTTCCCTTTTATGTCATTCCAAAGCAGTCGCCCTTTTTCCTCTCAgccgtttttttttctctcctgttttCTGGCATTAGAACTGATTAGATCCTGCTGACTGAATCAAAGATGTAGGTAGAGCTGTGACTAGCTACAGCACAGACAGAACAGTGAGCATGCTGGGTAGCAGATGTATGTTTTCTGTCTCCCAGTAGCATCCAAGAGCACTTGTACAAAGGCAACATTTTCAACTGCCATGTAATGCAATTACCACCAGCAATATGCTTCATGGCAATGCATTGGGTTCTTTGACAAGCAAGCTGTTTTGTGGAAAAACTGCTATTTTATGTTAGAAATTGTCCCCAGATCTTTTTTGTTGGTACTGTGAACATGAAATGtaggaaaaaaattacactttgtagttatacttttttatattgatttaaagAGCATGTTTTTCCTGATTTGCTGGTAGGCAatgacaatttattattaaattaacctCTATTATAGTTTAATTGTCTTCTCAAGGTAAAAAGTcaacataattatattttttcaagCAACATTGTGACATTAAAAGAAAGGTCCACAATATGTGGTAGAGATggtattaacattaacatggtGCCACCTAGTGGAAATTTGGTATATGTGCAGGACCAAAATCATACATTAATTGACAAGCCTGTTTAGTTTTGGGATTTGTTCACATTCTTTGTGATGTGTTTACAATCAAACATCACTTCAACTGTCTTTGGAAACATGTCATATGCTGTAGACCTTTTGCATCGAGATGCTAAGCGTTAAAAATGCAGTAGGAATGCTGGGGGAAGGACTGGCAGCTGCATGTTATGTGGATGCTTCATCGTGTTCGAGACGGTTAGTAAGGGATAGTACTGACTAAAGCAGATCTAGTGCTTTCTGTGCGTATCACACATCCCTGTGCTATTAGAGGACATAGAGGCATTAGGTGACATTGATTCAATAAACAGCTCTGAATGTACGTGCTTGGTTGTGTTTTGCCTGTCGATCAGTTTgtactaggaaaaaaaaaatctaatgagTATGGAGTTGGTGCGAGTCTGATACTTAGGTCAGCCATGCAGAATGTGCTTAATAGAGCTATTAAAATTAGgtcattttcagtatttcacacaaatgaaaaacattcattGAAAAAAGAAGTTTCCTGAGTTCAATGAAGactatttttaatcaaaaagtTTTGTACTGGATGTTTATAAACTGGAATGTATATGGCACAGCATCCTTATCTCAACCAATGGGCCCAACattcaaaaatttaaaaagttcatCTACTTCCACATTGTAAGCTACTGTAAGCAGTTGTAAACATGTACCTCTCCACATGCGTTACCTGAGGTATGTTTACATGTAAgctattatttttcaaatacatcacagaagtaataaaatatatgatgtaatataccaataaaaaatattaaggtATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78732 lncRNA downstream 222708 18015144 ~ 18020809 (-) True G66387
TU78678 lncRNA downstream 378634 17864010 ~ 17864883 (-) True G66355
TU78672 lncRNA downstream 430991 17799122 ~ 17812526 (-) True G66349
TU78673 lncRNA downstream 434503 17801666 ~ 17809014 (-) True G66350
TU78620 lncRNA downstream 542263 17696777 ~ 17701254 (-) True G66318
TU79023 lncRNA upstream 5052 18386561 ~ 18386990 (-) True G66651
XR_003403990.2 lncRNA upstream 117842 18499351 ~ 18514718 (-) True LOC113539972
XR_003403989.2 lncRNA upstream 120022 18501531 ~ 18514718 (-) False LOC113539972
TU79437 lncRNA upstream 565809 18947318 ~ 18947539 (-) True G67016
TU79924 lncRNA upstream 946839 19328348 ~ 19340529 (-) True G67454
XM_026936315.2 mRNA downstream 24605 18197287 ~ 18218912 (-) True LOC113540092
XM_026936314.2 mRNA downstream 24605 18201456 ~ 18218912 (-) False LOC113540092
XM_026936197.2 mRNA downstream 47743 18187643 ~ 18195774 (-) True myoz2a
XM_026935847.2 mRNA downstream 65747 18143307 ~ 18177770 (-) True LOC113539796
XM_026937184.2 mRNA downstream 131513 18108902 ~ 18112004 (-) True LOC113540602
XM_026936913.2 mRNA upstream 6390 18387899 ~ 18422774 (-) True adgra3
XM_026936424.2 mRNA upstream 151414 18532923 ~ 18564790 (-) True ppargc1a
XM_026936423.2 mRNA upstream 151414 18532923 ~ 18564786 (-) False ppargc1a
XM_034304006.1 mRNA upstream 151414 18532923 ~ 18564217 (-) False ppargc1a
XM_026936167.2 mRNA upstream 438790 18820299 ~ 18845420 (-) True dhx15
XR_003404075.1 other downstream 327746 17915630 ~ 17915771 (-) True LOC113540701
TU78662 other downstream 413391 17792226 ~ 17830126 (-) False map11
trnas-uga other downstream 472286 17771150 ~ 17771231 (-) True trnas-uga
TU78578 other downstream 608649 17594449 ~ 17634868 (-) True G66281
TU78241 other downstream 799343 17439493 ~ 17444174 (-) False rnaseka
XR_003404117.1 other upstream 635314 19016823 ~ 19016953 (-) True LOC113540749
XR_003404118.1 other upstream 635761 19017270 ~ 19017400 (-) True LOC113540750
XR_004578062.1 other upstream 672198 19053707 ~ 19155217 (-) False LOC113540242
XR_003404109.2 other upstream 841230 19222739 ~ 19222843 (-) True LOC113540739
TU80099 other upstream 1506670 19888179 ~ 19888726 (-) True G67587

Expression Profile