RNA id: XM_026936326.2


Basic Information

Item Value
RNA id XM_026936326.2
length 6012
RNA type mRNA
GC content 0.54
exon number 52
gene id col4a5
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13747239 ~ 13797445 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGAAAAAGTTAAGGTCGCAGTAGGCAACGGTCCTATCGCTGAAGAGACTGGAGACTTGAGAAGAATCCGCCTTTTTTAGTTGGAAAAAACAACACTCCATATTACAGTGAAGTTATCAGGGGAATATGAGAAGTTCCATACGCGCTCGAGGTGATAATTGTCGTTGTTGAGAGGGTGgattctttaaaaatgaataaaaagttaaaGAGTCTGCAGAACCTCGTCGCCGTGCTCCTCTTCATATCTGTGTCCGTAGGGGTTCAGCGGTCTGAGTGCGCGgcatgTAATGGCTGTGGGACTGGATGGAAGTGTGACTGCAGTGGAGTGAAAGGAGCGAAGggTGAAAGAGGTTTTCCAGGTCAATCAGGTCATCCAGGTGCACCAGGATTCCCTGGACCAGAAGGGCCAATTGGACCCCGTGGAGAGAAGGGTGATGATGGACCTCCAGGACCGCCTGGACTTAAAGGAATAAGAGGACCTCCTGGACTCCCTGGATTTGCAGGGACGCCAGGAATTCCAGGTCTTCCGGGATTGGATGGGGCTCCAGGTCCAAAAGGAATTGCAGGCTGTAACGGAACAAAGGGTGACCGAGGATTCCCCGGAAGTCCAGGATTCCCTGGTATAGATGGTCCACGGGGAACAACTGGTGAGCCAGGACAGAAGGGAGAGCCTGGTGAGGTTATCTCTACAGGAACTCACGGAACACCAGGAGGCCCAGGAAGCATCGGTCAGCCAGGCCCCAGAgGAGATCCAGGACTGCCCGGGTTGCCAGGTCCTACTGGTCCTCCGGGTCCAAGAGGTTACGAtGGGCCACCAGGTACCCCTGGTCCACCAGGGCCAAAGGGAAATATGGGGCTGAACTTCCAAGGGCCAAAAGGAGAGAAGggtgAACCTGGGTTGCAGGGGCCTCCTGGGCCACCAGGGCAAGTCGACCAATTAATAGGTGAAACAGACGGCGTGATTCATCGAGGAGAGAAGGGTGACCGTGGACCACCTGGACCCCCTGGATATCCTGGCCCTCCTGGACCATCTGGCCCAAGTGGCGGTCCGAAGGGAGAGAAGGGAGAGCCAGGAGAATCTGGAAAGAGGGGTAAACCTGGTAAAGATGGGGACCCTGGCCCTCCTGGACTTCAGggtGTCACAGGAGACCCTGGTGTACCTGGTCTTCCAGGAAGAGCAGGAGAAAGAGGTGAGAAAGGAGAACGAGGACTACCTGGACCTCCAGGCGTGGTGACATCCCCATCCGAGAGCCGAGAAGGACCTAAAGGAGATCCTGGGCTTCCTGGAGCCCCTGGGAGGAAAGGAGAGCCAGGACTACCTGGTGTCCAAGGACCACCAGGTCAGCCAGGTCGTCCAGGAATCGGAAGTCAAGGCCCACCTGGCCCCCCAGGATATcaaggagagagaggacagaaggGAGATCAAGGATCGCCTGGAGTTTctcttccaggttctcctggCAGACCTGGACCACCAGGTTTACAAGGGCCTTCAGGACCTCCAGGACCTCCAGGAATATCCACCGGTGGTGAAAACTGCCTCCCAGGGCCTGCTGGACTTCCAGGCCTGAATGGGGAACCTGGTTACCCAGGAGAGATAGGCCAGAAAGGTGAAAAGGGGGACACGTGTGTGAATTGTTTCTCAAGTGGCAATCTCATCCCAGGACCACAGGGTCCACCTGGACCCCCAGGACCTGCAGGCAGTCCTGGGCTCCCTGGTTttaaaggagagagaggacCCCCAGGCAGCCCTGGTTTTATGGGGCCACCAGGTTTACAAGGATCACAAGGTTCACCTGGACTACCTGGAGAGAAGGGTGACCCTGGTGAAGCAATTGCCCTTGATGCTATGAAGGGAGATAAAGGAGACACAGGATTCCCTGGCCCTCCAGGTCTGCCTGGCCGGGATGGAGCACCTGGTCGAAATGGAGCTCCTGGACCGCCTGGTCCCAAAGGTGCACCTGGTTCCCTAATGCTTAAAGGTGAACGTGGCCTTCCTGGAGATCCTGGTCTCCAAGGTCCTCCTGGAGACAGGGGCCCTCCTGGTTCCCCTGGATTTGGCCCACAGGGACCTCCTGGAGAGAAAGGATTCCAGGGTGTGTCAGGAAGGCAAGGACTTCCTGGACCTCCAGGTCAGAAAGGTGAACCAGGTCAGACTGTCTCTGAGAAAGGGGCACCTGGACCCAGAGGACGTGATGGAGACCCCGGTCTACCAGGAAATCCAGGTGACCCAGGCCAACCTGGTTCCCCTGGTTTCCCAGGATTACCTGGCCAAAAAGGAGAACCTGGTCTCCCGGGTATAGGCTTGCCAGGCCCACCAGGTCCTAAAGGATTCCCAGGTATTGCGGGAAGTCCCGGCGGCCCTGGCAGGCTTGGACCTCCTGGTGTGGATGGACTACCCGGTGTACCTGGACTCCGTGGACCTAAGGGCGCACCTGGTTATGGTATTCCTGGCCCTCAGGGGCCCCCAGGTTTACCTGGCAGTAAGGGTTTTCCCGGGCCTAAAGGTGATCCTGGATTCCCTGGAAATCCGGGTGCACCCGGTCGACCTGGTATTGATGGTCCTCCCGGCTATAAAGGTGAGCCTGGTCTTCCTGGTCCTCCGGGTGCACGTGGCCCTCAAGGCCCCGCTGGTTTTGGTTTACCTGGACTACCTGGACCAGCAGGACCTCCTGGACCTATGGGCAATCCTGGTTCCCCTGGTTTGAATGGTGAGAAAGGAGACCCTGGTTCCCCTGGACTGGATATTCCAGGCTTGCCTGGTGACCAGGGTAGCCCCGGATTGCCTGGACCACCTGGTTCTCCTGGCCCTCCTGGGAATCCTGGTAACCCTGGCCAAGATGGACTACCTGGATTCGCTGGGCAAAAGGGAGAAATGGGTGTGATGGGTGCTCCAGGACCTGCTGGTAATCCTGGCAGCCCTGGTGTTCCAGGATTTCCTGGACCAAAAGGTGATAATGGTCAGTCAGGACTGCCAGGAATTCAAGGTGTGAATGGAGCAAAGGGAGATAAAGGTGAACCAGGTCTAAGAGGCCCTGCTGGTATCAGCATTCCTGGTGCCTTAGTAAAAGGAGCGAAGGGTGAACCAGGACCTCAAGGAATTAGTGGAGTTTCAGGAGCGAAAGGTATTCCTGGCCTTCCAGGAGATCCAGGTATCCCTGGACAGGATGGACTTCCTGGGCCACCTGGACCCCCAGGTCCCAAGGGAGATTCCGGAATTCCAGGAACAACAGGAGTCCCTGGTGCTCCAGGACAGAAAGGCAGCATGGGCGAGATGGGATTACCTGGCCCTCCTGGAGTTAAAGGAAGTCCAGGTCAGCCTGGGCGACCTGGACAGCCTGGATCTCCAGGAGCACCAGGATTCTCAGGACCAAAAGGAGACCCTGGAACACCAGGATTTGGGCAACCAGGAGCTCCAGGACCCAAGGGTGAACCTGGCTCTCCTGGTACCCCTGGAACTGCAGGGCCAAAAGGTCAACAGGGGCCCCCAGGAAGTTCAGGGATACCTGGGGGCCCTGGCCCAAAGGGTGATCCTGGCCTCCCAGGATTACAAGGTGCACCTGGCGCTACTGGTCCTAAGGGTCTGGATGGAGTCCCAGGTGCCCCTGGTCTAGCAGGATCACCTGGAAGGCCAGGAACCCCTGGCCAACCTGGTTTGCCAGGTGCACCTGGAGACAAGGGTCAAGCTGGTCGTGATGGTATTCCTGGACCAGCAGGATTGAAGGGAGAGCCAGgtaTACCAGGTTATGGACTCCCAGGTCCTCCAGGCATTCCTGGAATGCCAGGTCAGAAAGGAGACCCTGGCCTTCCTGGCCAGCCTGGCAGCCCTGGTTTCCCTGGACCAAAGGGTGATATAGGATCCGCTGGTGCAACAGGCAGCCCTGGTTCTCAAGGGCCCCCTGGTCCTCCGGGTCAGTCCATTCAAGGGCCTAAAGGCTTCCAGGGTCCCCCTGGACCACCAGGAAGAGGAGGCCCAGAAGGTCCTCCAGGTCCTCCTGGCCCAGAGGGGCCCCGTGGACCACCAGGTTCTGGAGGAGTGAAGGGTGAGAAAGGCTACTCTGGAAATCCTGGATCACCTGGTTTACCTGGACAGAAGGGAGACACTGGACCACAAGGTTTTACGGGCCCTCCTGGACCTCCTGGAACTGTCGGACTTAAAGGAGACGTTGGCCTTCCGGGCATTACAGGATTCCCAGGACCTAAAGGTCAGCCTGGTAATTCTGGGCCTGCTGGTCTGCGTGGTGATCCCGGTGAACCTGGTCCTCCAGGTCTTCCTGGTGACCCAGGTCAAGCTCCGGCCCCAATTGTGATAAAGGGTGTGCAGGGGCCTCCTGGTCCTTCAGGATCCCAAGGACCCCCAGGGCCACCAGGAAAGGCAGGACTGGAGGGGCTTCCAGGTCAGTCTGGTAGTAATGGTGACCCAGGTCCTGATGGACCTCCAGGATTCACTGGTCCAGCTGGAAGGAAAGGAGAATCAGGACCAACTGGGCAGCCAGGTCAGCAGGGTTTACCTGGCCCTCCTGGTCCAGATGGGCTTCAAGGGCCACCAGGTCCCCCAGGTCTGTCATCAGCAGCTCATGGCTTCCTGATTACGCGACACAGTCAGACTACAGATGTACCGCAATGCCCATTTGGCACCTCTCTGATCTATGATGGCTATTCTCTGCTTTACGTGCAGGGCAATGAGAGGGCACATGGCCAAGACCTGGGTACGGCTGGAAGTTGTCTACGTCGTTTCAGCACCATGCCTTTCATGTTCTGCAACATCAACAATGTTTGCAACTTTGCTTCCCGGAATGACTACTCATATTGGTTGTCTACTCCTGAACCCATGCCCATGAGCATGGCTCCTATCCAGGGAGAAAGCATCAAACCCTACATCAGCAGATGTGCTGTATGTGAAGCCCCAGCTATGGTGATAGCAGTGCACAGCCAGACCATCCAACTGCCATCATGTCCAAAGTCCTGGGAGCCACTGTGGATTGGCTATTCCTTCATGATGCACACTAGTGCAGGTGCAGAGGGCTCTGGTCAGGCTCTGGCCTCACCTGGCTCCTGTCTGGAGGAGTTTCGTTCATCTCCCTTCATTGAGTGCCACGGCCACGGAACCTGCAACTACTATGGCAACTCCTATAGCTTCTGGCTGGCCACCGTCGAACAGTCTGAAATGTTCAGGAAGCCACAATCTGAGACGCTGAAAGCAGGGAATCTCCAGACACGCGTGAGTCGCTGTATTGTGTGTATGAAGAGGACGTAACATAGCAATGCTGAATACAGCATGACCCCTTATCAGGGGTGATCACCACAGCGACTGCAACAGTTACATCGAGAACAAGTGGAATTCTAGTGGTGCATTATCTTCAAGTTCAACTCTATGGTGCTACTGTGCAACACAgcaaaaaactgaaaaaattaCTAgtctttacttttttaaagaagtacctcatacagagacagaaacatcaACAAAGGTGCCATGATGGATCAGTgacaaaaaagtgcattttttccctcctttttttttgttttctttaaaagaaatttcTTTCTCATAGAATTGTGGTTGGTATGCAAACACCACATTTTTAGAGAGAAGTTTTCGCAAAGTACTGAAATTCTCTCCATGTTACCAAATCGGCACTTTGAACATCAATGAGAAAAATGCACTGAATAGTTACATTAGCGAGACTGcattttttaatgctttatttttttcatcactcttttctttctcccactTCTTGATGGTACTAACACTGCTGTATCCAAGAATTTATAACTACAAGCCTTTTATCTATTttgtaagtaataaaatgtgtatattgtgtaaaaCGCCTTTTTAGTCTAAAACCTTAAACGGTActttacaattaattttttcGACTCTTTGGCACGTGTTCATTCTCTCACTCCATCAATCACTCTTTCATATTCTATCTCACCTTTTCACTTACACAATATTTGTACAAAGTAAACATTCTTTTAATGAAacagtattttatataaatatg

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0007412 axon target recognition biological_process
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06237 COL4A; collagen type IV alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76107 lncRNA downstream 3641 13738589 ~ 13743598 (-) True G64222
XR_004578000.1 lncRNA downstream 23323 13716325 ~ 13723916 (-) True LOC117597078
TU75988 lncRNA downstream 177642 13564633 ~ 13569597 (-) True G64147
TU76015 lncRNA downstream 192162 13554864 ~ 13555077 (-) True G64164
TU76014 lncRNA downstream 192893 13554088 ~ 13554346 (-) True G64163
TU76151 lncRNA upstream 71564 13869009 ~ 13872279 (-) True G64261
TU76137 lncRNA upstream 80585 13878030 ~ 13880728 (-) True G64252
TU76160 lncRNA upstream 91243 13888688 ~ 13890217 (-) True G64267
XR_003404036.2 lncRNA upstream 105453 13902898 ~ 13911755 (-) True LOC113540541
TU76139 lncRNA upstream 105479 13902924 ~ 13909305 (-) False G64252
XM_026936261.2 mRNA downstream 52239 13684736 ~ 13695000 (-) True usp12b
XM_026937076.2 mRNA downstream 213975 13527886 ~ 13533264 (-) True cnpy4
XM_026936111.2 mRNA downstream 225713 13505741 ~ 13521526 (-) True ntn5
XM_026936415.2 mRNA downstream 306719 13437087 ~ 13440520 (-) False zgc:194312
XM_026935899.2 mRNA downstream 357274 13388333 ~ 13389965 (-) True si:ch73-335l21.4
XM_026936919.2 mRNA upstream 115238 13912683 ~ 13967911 (-) True sema4f
XM_026936736.2 mRNA upstream 221013 14018458 ~ 14033040 (-) True dok1b
XM_026936012.2 mRNA upstream 244506 14041951 ~ 14054035 (-) True LOC113539907
XM_026936443.2 mRNA upstream 282260 14079705 ~ 14086981 (-) True cct7
XM_034303617.1 mRNA upstream 359991 14157436 ~ 14220288 (-) False plcb3
XR_003404098.1 other downstream 542777 13204273 ~ 13204462 (-) True LOC113540725
TU74901 other downstream 1469570 12272372 ~ 12277669 (-) False LOC113539775
TU74900 other downstream 1469627 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other downstream 1469627 12272372 ~ 12277612 (-) False LOC113539775
TU74889 other downstream 1498183 12247274 ~ 12249056 (-) False si:dkey-165a24.9
XR_003404087.1 other upstream 106386 13903831 ~ 13904021 (-) True LOC113540713
XR_003404068.1 other upstream 110392 13907837 ~ 13908000 (-) True LOC113540694
XR_004578131.1 other upstream 111722 13909167 ~ 13909357 (-) True LOC113540747
TU76338 other upstream 435364 14232809 ~ 14243681 (-) True G64436
trnae-cuc_13 other upstream 937211 14734656 ~ 14734727 (-) True trnae-cuc_13

Expression Profile