RNA id: XM_034303626.1


Basic Information

Item Value
RNA id XM_034303626.1
length 1093
RNA type mRNA
GC content 0.45
exon number 6
gene id prdx1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28708029 ~ 28711708 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgattaaataatgtttaaatgagTCCAACAGAAGATGTCCGCTGGTAAAGCACAAATCGGCAAACCTGCCCCTGACTTCACAGCCAAGGCAGTGATGCCTGATGGCCAGTTTAAGGATCTGAAGTTGTCGGATTATCGAGggAAGTATGTAGTTTTCTTCTTCTACCCCCTGGACTTCACCTTCGTGTGTCCCACCGAGATCATCGCCTTCAGCGATGCAGCAGAGGAATTCAGAAAGATCGACTGCGAGGTCATCGGTGCGTCTGTGGACTCACACTTCTGCCATCTGGCCTGgaTAAACACCCCCAGGAAGCAAGGAGGCCTGGGACATATGAAGGTCCCTCTGGTGGCCGACACCAAACGGTCCATCTCTCAAGACTACGGTGTACTGAAGGAGGACGAAGGCATCGCTTACAGAGGCCTGTTCATCATTGACGATAAAGGCATCCTGAGGCAGATAACCATTAACGACCTGCCGGTTGGTCGCTCGATcgacgagacgctgcgtctggTGCAGGCCTTTCAGTTCACTGACAAACACGGAGAAGTTTGCCCCGCCGGATGGAAGCCCGGAAAGGACACAATCAAGCCCGATGTCCAGAAGAGCAAAGATTTCTTCtccaaacaaaactaaacacatAAGACTCTGCAGTGTAGTCTAACAGGCCCCACACTGGCACTTGTCTCAAACCTCAGTAACAATTCCCTCTCTGTTAAGCCTGAAATAAGTGTGTAGGATCATAATTGTTGTTTATGTTGTGTGACTTTGTGAGAAGTATGACGGTCATGTAGAAGACTACTATTTTGTATGTTTACACCTTTTATCATGTTTCCTTTGTGAGATAAAAAGGATAATAACAGATGGGGGACCTGGTTTTTATTCTGGTTTCAGTAAGAACAGATTTTGTAGCACAGCAcgatgagggaatgactttgCGCTTGCCCAAGTTCCTGATTGCCTGCATTTCAACCAAGAAACCAAGGTTTTGTAACAGATTTAAGCTAACTTTTAAAGCTTGCTGATAAAGCAATATCATTTAAGAAgtttatacatattatacacacaatTTATACAATAAATGTTTTGACTAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86306 lncRNA downstream 39386 28667323 ~ 28668643 (-) True G72796
TU86223 lncRNA downstream 236258 28397661 ~ 28471771 (-) True G72726
TU86202 lncRNA downstream 324569 28343134 ~ 28383460 (-) True G72709
TU86215 lncRNA downstream 328897 28365657 ~ 28379132 (-) True G72720
TU86175 lncRNA downstream 508220 28199219 ~ 28199809 (-) False LOC117597043
XR_004577998.1 lncRNA upstream 1945 28713034 ~ 28717955 (-) True LOC117597077
TU86345 lncRNA upstream 71834 28782923 ~ 28784140 (-) True G72824
TU86322 lncRNA upstream 76534 28787623 ~ 28791829 (-) False LOC117597168
TU86430 lncRNA upstream 121295 28832384 ~ 28833720 (-) True G72893
XR_004577988.1 lncRNA upstream 180927 28892016 ~ 28896799 (-) False LOC117597038
XM_026936878.2 mRNA downstream 1506 28699669 ~ 28706523 (-) True zte38
XM_026937185.2 mRNA downstream 18017 28686556 ~ 28690012 (-) True uck2b
XM_026937186.2 mRNA downstream 22453 28682472 ~ 28685576 (-) True czib
XM_034304106.1 mRNA downstream 27325 28668979 ~ 28680704 (-) True scp2a
XM_026936934.2 mRNA downstream 55604 28648324 ~ 28652425 (-) True LOC113540437
XM_034303624.1 mRNA upstream 11761 28722850 ~ 28736753 (-) True si:ch73-182a11.2
XM_034303625.1 mRNA upstream 14731 28725820 ~ 28736753 (-) False si:ch73-182a11.2
XM_034303988.1 mRNA upstream 34541 28745630 ~ 28756644 (-) True LOC113540626
XM_026936110.2 mRNA upstream 51005 28762094 ~ 28763277 (-) True arl14
XM_026936500.2 mRNA upstream 52215 28763304 ~ 28785755 (-) False ppm1la
XR_004578096.1 other downstream 55604 28648324 ~ 28652425 (-) False LOC113540437
trnas-uga_2 other downstream 471224 28236724 ~ 28236805 (-) True trnas-uga_2
trnas-uga_1 other downstream 471762 28236186 ~ 28236267 (-) True trnas-uga_1
XR_003404039.2 other downstream 666244 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 1083221 27624736 ~ 27624808 (-) True trnat-ugu_9
XR_004577984.1 other upstream 162489 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 162491 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other upstream 171238 28882327 ~ 28884965 (-) False LOC117597037
TU86878 other upstream 437549 29148638 ~ 29152381 (-) False usp33
XR_003404076.1 other upstream 812305 29523394 ~ 29523466 (-) True LOC113540702

Expression Profile