RNA id: XM_026936348.2


Basic Information

Item Value
RNA id XM_026936348.2
length 6716
RNA type mRNA
GC content 0.46
exon number 10
gene id shroom4
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16605696 ~ 16648129 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTACTGCAGAATGGAGAAGGTCTGGAAGAAGTCATTATTCTGATGTCTTTAAACCGCTGACAATCTGGACTTAACAAGGATGGAGTGCTGTTTATTCATGGCTTGAGGCAACAGGGTTTGTTCTAATGGAAGGAGCTAGATAGCTTAGAGATCCATCTACTTGTTCTTGGTTCTCTCTTTCATGTGCAGCTCTCAGTCCTGGGTTTCAGGAGCTGTGAACACTTTGGAAACTGATGAGataGAAGAAGGAGGGAAGGCAGCTGAGTGTAAGAAGCTGAGGGTGGGAGACGAACTGGTCAACATCAACGGCTCTGCACTCTACGGCTCCCGCCAAGAAGCTCTGATCCTCATCAAAGGCTCCTACAGGGTCCTCAAGATTGTTGTCCGCAGACGCACTGTGCCGCTGATTCATCCTCACTCCTGGCACCTGGTGAAGTTATCAGAAGCACCCTCCGTGCCTGGTTCAGCAGGCAGTTCAGACGGCCCGCTGGCCATGCAGCTCCACCCCACACCCTTCAGTGTACCGTGGCACTCTGGGGGTGACAGTGAGCTGTCCATGCCGTTGGGCCACCTCTCCCGGCACTACAGCACAGACCGCAGCAGCTCTGTGGGGAGTATGGAGAGTCTGGAAAACCCTCCAAGTCAGGGTTACTACGACAGCCAGCTCTCTCCCATTGACCCTGCCATCTTTAATAATAAACGTGACTCGGCTTATAGCTCTTTCTCTGCAAGCTCAAACACATCTGACTATACGGTATCTCTGCGCCCTGAGGAAAACAGCTCTATGGACAGTCTCCTGCAGGGCTTTGGCCCCTCCTGCAGGTTTACAGAGGGACATCCACATTCTGCAGCTAGTGGCCCAGGAGAACTGCACTGTGAGGAGGGGATTCTCAAGTCTAGGCCTCTGCCTCATAGGCCAGAGGCTAAAGTACGTCCATCATCCTATAGCTATGAAGAAGACAAGTGTGGACCTCCACAACCTCCCATGAGGAAGGATAGTTTTAGGGCTACCAGAGGCCTACCAGAGGTGTTGGATAAACGTTGTGTGTCTGCTCCTGTTGGTGTGTCAAGTTTGACTTGCTGCACTATTGAAGACCCTCCTCACATCCGCAAGGCACTGAATGGGAGTATGTGTCTGAATGGTCCAGACAATGACCAGGACTTGAAGGGAAACAAAGCAGAACCTTATTACACAATAAATTCTCAAAAAGAATTGTTTACAGATAACAAAGTCAGCTCAAAAGAGGgatgccaaaagagcagtcaCTTCCAGCCCCTAGATAGGCATTCACCCAGGCCCAGTCCTCCAACAGCAGAGAGCCTTGATAGTCAACTCAATCATTTAGATAACAATCCCCAGCCTAGGATGCACAGACATAGTGCCCCTGAAAAATTACTTGTCTCTCAGTTACACATGATAGAGCTctccagtgacaatagtgcacATTCAATGTCCCCTCCTAGCCTGTGGTCTAATACTCTGCACCCCAGGGAGGAACTACGTGAAGACAGTCCAGCTGTAGCTCAGGGTAAATGGGGAGGAAGCAGGTGCTCCACACCCGGTTCACTGACTACTTCGGAGCTAGAGGAACACAGGGCAGAGGGAGAACCATTTGATTCAGGCCAAATACTTACTCCTATCCAGCATACTTGGGGAAGATCTGTCAGTGTTCCAGGTGAAACTATAGGAAATGGATTTACTGAGTCTGGACCCTGCATAGATTCTCAGCTTCATGAGAGAGGTTTTGAGACCATTAGTGCTGCCTCCAGCATGGACACTCTACTTGAGAACCAGGAACAAGGAGAAGGCAAGAGTGATGATGGTGAAATTTCAAAGCCTCCTCAGAAGCGCCAGTTTCGTTCATCTAAGTCTCGCCGTCGAAGTGAACGTTTTGCCACAAACCTTCGCAATGAGATCCAGAGGAAGAAGGCTCAGCTACACAAGAGCAAAGGCCCAGGTGGTCTGCTGTGTGATGGCGAGACTGTAGAGGAAGAGGATATGGAAGAAAAATCCCCATCAGAGGTGCCAGCCATCCATCAACACAGGACCCAAACACAGACTAATCAACACAACAGCTTCCAGAAGTGTACTCCATCTCAGGCCAGAACAATTGCCTCAAACTCAACATTTCCAGGCAGATGCTGTGGAACAAATTCTGCAGAGCATTCAGGGAGCAGAACTGAAGATTTCCATCTTTCACAGGATGAAACCCATGGAGTCCAGTCAGCTGAGGTAAACAGAcctgtatgtgtgcgtgtggtcGAAGAGTTGGCACCACCGGGTAAAGCCAGACGTTGGCGCTGGACACCTGAGCACAAACTGCAACCAGAAATAGAATCAACTGAAATAAAGAAGAATGGTGAAGGAACAGCACCGCCTTCTTGGAACCTTGGAACAACAAGGGGAAGAGTGGTTTCTTCAGGTGGGCGCTCTACCCGAGCTGATGATTGTGACATCCCACCTTTTGCAGACCGCAGGAAGTTCTTTGAAGAGACTAGCAGAAACCTGAGCCAGTCTGTGACAAACCTGGCAGGGCTTACAGGCCACCGCCAGAGACCAGAGAAGCATGGGAGAAAGAAAGATCCAACTTCCCCTGAACCCCTTGAATCAGTCCCTGACCTTGGACGTAGGAGGTTCTCTTACCAGGGTGGAATTAATGATGGAACCTCAGTCAATTCATTTGATACTAGAAGAAACAGAGtccagcaagagagagacagagagagagaaaatacactggagagagaatgggagaaggagagggagaaagagaaacagatggaaaaagaacaagaacaagagaTGCGTAAAGAACAGGAGAGGCTACAGGCATGGGAAaaagagcaggagcaggagagggagagagaaagagctagAAAGGAAACCGaaagagagcgacagagagtgcaacagatggagagagactgGGAAACCAGTAGAGATCGCTTTTATGCAGGATATGACCTCAACAATACCACAGTGTTACCACCTTTGCCTCATGATAACCTAAAACAACCACTTACAGCTCAGAATCTAACCCTGCGTAATTCACGCTCTGCCAGTTTTCATAACAAGACCAACCCTGACATCCAAAAGCCATGCTCAGCCTTCCGACCTGTAACTAGCCAGCAGTATCAATCTGACCACTGCTGTCTACACCCTGGATACAAGGCCAGGAGCTGCACTCCAACAGAGGCTTTTCCTGTGCATGAGCTGGAACAAACAAAACTTAGGAGGAAGTTTAGCCTGACTGAAAGGGACTATACTCAGTGTAGACGAGATTCAAGACCAGCAGAGGTTACAGTGGGTCGGGGATTTCAGTGTCAGTGGCACAACAGACTATGTGATTGCAACAACAAGGATCAACCCATCATGTCATCAACACTGACAAACCGAGCCATGTCTGAAAATGACATTCGCATAGAGACCAAGTATCTTCATAGCCATGGTGCAGCTGCTACCAATAATAGCAGAATGTCTTCATCCATCGTCAGGGAACTGGATGAGAATGTTGTATCTGTAGTTgagacaaagaagaaaaaagggcctcctcctcctcggcCACCACCTCCAAAATGGGAGCAGTTCCATAAGAGAAGGGCATCTCACCACAGTCTCTTCTCTTCCCAACCTGCCTCTTCTTCCCAGTTCCAAACATACACACCCTGTCCATCCACTGCCCTGGAAATGACTCGGCAGCGGTCCTACAGCCTTCCTCCAAGCGATGATGCAGAAAGTCACCAAGCTCTGCTAAACCCTGCCTTAAATAACAGAGCTTTCAAACCTGTGGCCCTGCCTCCAAAAGAACGAGACACTACCAGAGTTCAGCACTATGAAATAAAGAGTTCCGAAGACATACCAACATCCTCAAATGAGTCGAGCCAAAGAGTTTCTGAGCAAAGCTTGGCCCAGCCTTCAGATCAGTACATACCAGCTGTGGTGAAACCAGTCATTTATAAGCATAGAGCAGAGTGGGACTTGACTTCTCCTCACAACTACACAGCAAGCAGCAATGCTAGCAAGTCACCAGTCCTGGTCCCTACTTTGGAGAATGGCTCTTGCACTGGACCTGTCTATCCTGAGTCCTACTTCACAATGAACTACAACCACCACCAGCATTTACAGAACCAGCCTCAGCAAATATGCATGCCTGGCAGAACCATCAAGACTCTGGAACCTTCCAACCAAAGTCTACCTCCCAGCGAGGATCAATCCTTGCCCTATGAGACAGACATAGATGAGTTCCATGAGAATGAGGAAACAGCAGTGGAGCAGCAAAGGCAAGCAGAAGACAGGACTGAGATTCAATGTTTTGCTCAGCCAGTGACGGTGCTGGAAACTGACATCGACACTGTGACTGACGATGAGGCTCCATCATCACGGATGAGGAGAGGGCAACGGGCGTCCATCGTGGACTCTTTATTGGAAGAGGATTGTGGCAGAGCTGGAAAGGAGCTTATGGGAGAACTGTTCCCTCACTATACAGGGAGTGGAGCAGAAGGCTGGAGAGGAGGCAATATAGTGAGTGGAGACATGGTAGAGAGGTCTTCTAGACAGAGCCCCTCAGTACCACAGGGCTCAACCTCTACCAGCTACAGAGGATCCAACAACAAAGCTCAACTCCTTAATAAGATGCCAAACTTCTCAGAGAtgaaggaggaggatgaagaacTTAATTACAAGAGGCAGCTGATGGAAAGCTTGCGTAAGAAGCTGGGTGTGTTGCGGGAAGCCCAAAGAGGTTTGCAGGAGGACATCAGAGCCAACGCTCAGCTTGGTGAGGAGGTGGAAAGCCTGGTGCTGGCCGTCTGCAAGCCAAACGAGGTCGACAAGTTCCGTATGTTTATTGGAGACCTGGACAAAGTGACAAGTCTTCTGTTGTCGCTCTCCGGCAGGCTGCTCAGAGTGGAGAGTGCTTTGGATTGCCTGGACCCAGAATCAGGCCATCGTGAAAGGCTCCCCCTGTTGGACAAGAAGAAGCAGCTCCTTGCACAGCTGGCTGAGGCTCAGGAGCTGAAGGAGCATGTGGACCGGAGGGAGGAGGCTGTGGGCAGGGTGCTGGGTCGCTGCCTGACTCCAGAACAACTGCGTGATTACAGCCATTTTGTGAAGATGAAGGCAGCACTGCTGGTAGAACAGCGGCAGCTGGATGATAAAATCCGGCTAGGGGAAGAACAGCTCCGAGGCCTGAAGGAGAGCCTTGGCCTGGGATACGGCCCTTACTGAAACTGGAACTGGAAGTAAAGTACAGGAAGGTTGCGTGTTCATATATGCACATAAATGGGCACACCTGAAAGTTTCTGATAAATAATTATGTTTGACTGTATTTGAACGTTATAACAAACCTGCAACATTGACAGTCAGAGACTTCTTAAGAAGCACAAGTACAGTGAATTTATCAGCTGTAGTATCAGCTGACGCTTGGTGGCAATATGTTGCCATTCCTTCACACAGAAGCATTACTCATAATTGTTGAGAAATAAGTAACACTAAGCAGTAAATGACCTCAAACTCCTACTCTAAGCCACATAATGCTGTGTGCGCGCACGTGCATCTCATTAATATCAACTGAAGACCTGTCCATGcactgctatttatttatttatatctctcaacaaaatcagaaaatcagATAAAGAACTCAAGAGTTATGTTGTTCTGTTTACTGAGATTTGGTCACCTTGTATATCAGCAAATTGAGCACTGAAAATTTTTGGCCCAATAATcatgttacatttcatgttactaGAAAGGTTTTTTGATCCATATGTGCAGGAATAGTGTTATGCTGTAACATCACAGAACAGCATTCTTCGGTTCAAACTGGAATTTGCTTTGTAATTTAAGTATAACAAAACCACCTTATGAAGATATCCATCTTTTCTTACTTCAGTCAGGTTAGAGCGATCAATGTGCATTCGTTACTCTCTGGGTATTTATGTGTTCTGTTCAGGTAACGGTCCACTTATTCAGGCAAATCATAAGCATTGAAGACATATTCGTGCCTTTTTCATTATAAAGTGCTTTACTGCATTTTTCGTAAGTGTTATCTGATTTTTTTGATGCCAAAGATTACTTTCATGTCTTAACACAAGAACAGAAATATGGTGCTTATTTTGGAGAACTACATGCAGTAACCTAGTCTTTAAAGGAAATTCTTGCTGTAGCTGTGTTTATTCAGTGCAGCTGTGTTTAACATTTTGATCACTTAAAACAGTTCTTACATTCCTTGTATATAATGTTCATGCTTGCAGTGTTGCAAATGTCatgtgtaatataatgtatCATTTTTGTTTCTGACTGAGCAAAGTGCTTTTTAATATCCTTATCCTCTTTAGAGGGAAGAATGCTGctttattgaacatttaatgTGCTGAGTTTTCAACCAACAATGTATTAAACCATATGTTGTtgagtttctctttttttttaatttcagaacTGCCTTTCAGCATTTAAGAGTGCCAAAGATGAATGTGCATTTGTTACAGTAAACAGCCAAAAACTATATTcatgtatactttttttttttacctaatgTATATActgtgctctttattttttttgttgtatcaTACCTGCGTAAATTATTTCACACTGGAAATGTATGAACATATTTGGTTGAACTATAAGTGATGAATTTCCCCAATTTTGGTTTGTTATAAATCCAGTGTGGAATATGTGGTATTGATtatagaatataaatattttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77679 lncRNA upstream 26287 16592447 ~ 16594457 (+) True G65601
TU77650 lncRNA upstream 43007 16569687 ~ 16577737 (+) True G65580
TU77609 lncRNA upstream 105903 16514637 ~ 16514841 (+) True G65542
TU77544 lncRNA upstream 177844 16431945 ~ 16442900 (+) True G65495
TU77422 lncRNA upstream 190058 16430461 ~ 16430686 (+) True G65395
TU77739 lncRNA downstream 28400 16676529 ~ 16677366 (+) True G65643
TU77740 lncRNA downstream 75766 16723895 ~ 16729352 (+) True G65644
TU77752 lncRNA downstream 103731 16751860 ~ 16752090 (+) True G65654
XR_003403984.2 lncRNA downstream 110098 16758227 ~ 16762011 (+) False LOC113539905
TU77754 lncRNA downstream 110131 16758260 ~ 16763461 (+) False LOC113539905
XM_034304130.1 mRNA upstream 130261 16470260 ~ 16490483 (+) True zpax4
XM_026936158.2 mRNA upstream 142892 16470260 ~ 16477852 (+) False zpax4
XM_026936157.2 mRNA upstream 143033 16470260 ~ 16477711 (+) False zpax4
XM_026937342.2 mRNA upstream 155516 16460591 ~ 16465228 (+) True si:dkey-19b23.8
XM_026937151.2 mRNA upstream 201814 16372007 ~ 16418930 (+) True chd3
XM_026935980.2 mRNA downstream 5692 16653821 ~ 16655884 (+) False cskmt
XM_026935981.2 mRNA downstream 5742 16653871 ~ 16655884 (+) True cskmt
XM_026936430.2 mRNA downstream 21328 16669457 ~ 16674227 (+) True krcp
XM_034303747.1 mRNA downstream 27306 16675435 ~ 16715097 (+) True mark2b
XM_034303748.1 mRNA downstream 27306 16675435 ~ 16715097 (+) False mark2b
XR_003404046.2 other upstream 250060 16367956 ~ 16370684 (+) False LOC113540582
XR_004578074.1 other upstream 301578 16310213 ~ 16319166 (+) False LOC113539780
XR_003403994.2 other upstream 580760 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1961808 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2351404 14255744 ~ 14269340 (+) False brms1
XR_003404110.1 other downstream 112390 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 112620 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 112852 16760981 ~ 16761107 (+) True LOC113540745
XR_003404113.1 other downstream 113137 16761266 ~ 16761338 (+) True LOC113540743
XR_003404114.1 other downstream 113443 16761572 ~ 16761647 (+) True LOC113540744

Expression Profile