RNA id: XM_034303623.1


Basic Information

Item Value
RNA id XM_034303623.1
length 1840
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC113540113
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23466417 ~ 23505181 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACCTGGGTTAATGAGAAATTCATTCCAGAGTAGTAAACAGTGtttactgtataaaaataaaggGGTTTTGTTCAGTAATAAGGAAATAACTTTATTCAAAGAAGAAAGGGTGAGTCTTGGGCATAAAGTGTTTAAGGTAAACATTCCCTGAAATTTAAGCTGTGTGAGTAGTGCTGCAACATTTCAGAGGGTCACACATACCAGTGTGTTAAATTAACCACCAGGGTGGCACAATGTCTTGTATTATTGTTagtattgtttttcttttcttttcaacaATTAGAAAATAACAAATGCACCAAATCTGGGTTAATGCTGCCTGAAAAGGTGGCCAATCCCCACcccaggaaatgacatcattactttataaatgaaaagaCTCATGTTGCAAACTAGCATTAATACAAAAACAGGTGCAATAAAGTGTGCTGAACTGAGAGCGTACTTTATTTTACAGccaaatcaaaatgtttataGCCATATATGCCGTTCTCTTCTCTCTGGTCACAGAAGCTGTTCTGGGAGTGAAACTGGAGCAAAAAGATCTCTCCATGACTAAAGAGGAGGGCAAAAGTGTGTATATCAGCTGCAGTGTGACCGACTTATCCAGAGATTATGTCCACTGGTACCAAAAGAAAGAAGGTGAAGCTCTCACAAGGATCCTATATGTTGAAAGTGGAAGCAAACCTGTTCATGATAACCATCCTGATGCAAAGGACTTCGATGTGAGAATAAAGTCTGGTAATTATGATCTGAAGATAGCAAACCCGAAGAAAAGTCACTCAGCAGTTTATTACTGCGCCAGCTGGGACAGGGGGGTGAAAGTCTTCGGCTCAGGGACAAGACTTTATGTCACAGacaaacaaaagaaaacgcCTACAGTATCTGTGTACCCAGTATCCAACGAGCAGGCGAATGGAAAGCGTGTACTGCTGTGCCAGGCGCAAGGCATGTTCCCAGACTTGGTGAAATTCACATGGTGGGATCCAAATGGAAAAGAAGTGCAGGCATCACAGGAAGGGTATGAGCTGCTGGAGCAAAGAGATGATCAGGAAGTCCGAATAACCAGCATGCTCATTGTACACCAAAGCAAAGTATCATCATACAATTACAAGTGCCTCGTCAAACATGAGGATGGAGAGCAGAGTCCAACCATTCCAGAAGCTAAAAAACCTGTTGCATCCACGTGCTCACCCCTACGAAAAGCAGAACAACAAGAAGAAGAGCAAGAGGAAAATCTAActtctgGTTTGTTTGAGCTCAGCCGCAGTCTGTATCTGTTCAGCGTGACGTATGTGATACTGCTGGTGAAAAACGTGTTGTATTTCTGCACTGTCTCTGTCTTACTGTACAAGAGGAATTCTGCTAACAAGGACATGCTTAGAGGCAAAGCTCGCTGATCGATTTTGTATTCTTGTTAGTTAAGAGTTTTGTTGAAGAGTGAAGTTTTGTTTAActctattgaaaaaaaaaaaaatctatagtAATCCAGTTTGTTAAACATCTGTTACTGTTAATCATCTCATTCTGTTCATATTTGTGATGTTTCTAATTGCTGCTATTATATATCCTTTCATGCTGCAATCTTCTTTCAGtaggaaattaaaaacaataacaacaacaacaacaacaataacaacaacaacaacagcaataacaaaACCCCACTGTGGACTGTTTGGGTGGCAGCATTAGCTTTCTCTAGTCCTTTAGTAGAAATAACAGACATAAATCTTGGAAATTTTCATTTGTTCTACTCTGTACTATGCTCTGTGGTATTCTGTTTCTTTAGCGCTCTTCTTATGACATTGTgctctgtaataataaaatgttttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82581 lncRNA downstream 12196 23453233 ~ 23454221 (-) True LOC113540115
XR_003403997.2 lncRNA downstream 12213 23453340 ~ 23454204 (-) False LOC113540115
XR_004577997.1 lncRNA downstream 12213 23453340 ~ 23454204 (-) False LOC113540115
TU82494 lncRNA downstream 68454 23396664 ~ 23397963 (-) True G69551
TU82468 lncRNA downstream 134882 23331016 ~ 23331535 (-) False retreg1
TU82643 lncRNA upstream 89150 23594331 ~ 23594544 (-) True G69649
TU82692 lncRNA upstream 145870 23651051 ~ 23651866 (-) True G69691
TU82956 lncRNA upstream 416925 23922106 ~ 23922538 (-) True G69916
XR_004578012.1 lncRNA upstream 426152 23931333 ~ 23932235 (-) True LOC117597086
TU83094 lncRNA upstream 633112 24138293 ~ 24138492 (-) True G70025
XM_034303848.1 mRNA downstream 2692 23446805 ~ 23463725 (-) True LOC113540011
XM_034303847.1 mRNA downstream 23674 23430300 ~ 23442743 (-) True LOC117597115
XM_034303846.1 mRNA downstream 47527 23409414 ~ 23418890 (-) True LOC113540008
XM_026935903.2 mRNA downstream 83529 23376456 ~ 23382888 (-) True nol7
XM_026936871.2 mRNA downstream 119844 23331017 ~ 23346573 (-) True retreg1
XM_026936182.2 mRNA upstream 32247 23537428 ~ 23544732 (-) True LOC113540016
XM_026936998.2 mRNA upstream 41989 23547170 ~ 23583496 (-) True amph
XM_034304072.1 mRNA upstream 41989 23547170 ~ 23583495 (-) False amph
XM_026936999.2 mRNA upstream 41989 23547170 ~ 23583495 (-) False amph
XM_026936706.2 mRNA upstream 253203 23758384 ~ 23782113 (-) True fam49ba
XR_004578082.1 other downstream 159483 23293951 ~ 23306934 (-) False lrrcc1
TU82055 other downstream 830665 22632185 ~ 22635752 (-) False LOC113540019
TU81579 other downstream 1531248 21934526 ~ 21935169 (-) True G68760
trnaa-ugc other downstream 2048178 21418168 ~ 21418239 (-) True trnaa-ugc
XR_004578105.1 other downstream 2095413 21368250 ~ 21371004 (-) False LOC113539989
LOC113540012 other upstream 8275 23513456 ~ 23514039 (-) True LOC113540012
LOC117597116 other upstream 9193 23514374 ~ 23514935 (-) True LOC117597116
LOC113540114 other upstream 10518 23515699 ~ 23516359 (-) True LOC113540114
LOC113540013 other upstream 11749 23516930 ~ 23517670 (-) True LOC113540013
LOC117597117 other upstream 26057 23531238 ~ 23532016 (-) True LOC117597117

Expression Profile