RNA id: XM_026936370.2


Basic Information

Item Value
RNA id XM_026936370.2
length 2999
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC113540120
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21337108 ~ 21350811 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTTACTTTGACCAGTAAATGAGTCTGAATCAGCCTACACACTCTGGCAAATCCCCAGTGCTTCTTATGgctctttatgcaaatgaaggtAGCAGTTGATGTGCTGTTTGTATGCCAAAAGTTATAAGTACATATAACCAAAGTTAAGAGAACCTACCCAGTGAAGCTAAAACATGTGATTATATCATCATCTTGGAGCAAGAGTGAATTCTGAACGTTGACTGAACTTTTAAGAATTAGtcaatCTCCATTGGTAGTATGGGATGTTTGAGTTCTAGGGAAAAGGGTGGTGGTGTGGAACAAAGGCCAAAACCCCAACCCCCAGAAGTCAAAAGATACGCCACAGACCGAACTCAGAATTCATCATCACTGTTGCCTGGGCAGGTTCTGCAGAATGGGGATGCTGTATCCACAGACAGCAAGATTGTGATTGCATTATTCTCATACGAAGCCGAGAATAAGAATGAGCTAAGTTTCAAAAAAGGAGAGAAGCTCGTAATATTGGATGAGAATGGCGAGTGGTGGAAAGCAAAGTCACTTTCCTCTAGCAAAGTAGGATTAATACCTTCCAATTACATAAAGCTAGAAGAGAGCATGGACAACAAAGActGGTACTTTAAGAACATCAGTAGAATAGCAGCTGAGAGAGACCTACTGGCTCCTGCCAATAAACCAGGTGCCTTCCTCATACGCCAGAGTGAGACAACCGCAGGAAGTTATTCCATGTCAGTGAGAGACGTGGGTCCTAATGGCTCAGCTATGGTAAAGCATTATAAGATTCGCCTATTGGAAGATGGAGGATTTTACATCTCTCCAAGAATCACCTTCAAAACATTAGATGACCTCATTGCGTACTATCAGAAGCAGGCCAGTGGTTTATGTCAGCGATTAGGCAAACCATGTGTAAAACCTAAAAATGCAGTCCAGTGGGATGAAGATGCTTGGGAAATTGCCAAAGAATCTCTTCATATGATGAAGAGGCTTGGAGCTGGTCAGTTTGGTGAAGTCTGGTtagcaaCGTATAACAACACTACTAAAGTAGCAGTGAAGACCCTGAAGCCAGGCAGCATGTCAGTTGAAGCATTTCTGCAGGAGGCTAATTTGATGAAAACTCTACGGCATGACCGCCTTGTCCGCCTTTACGCCGTGGTCACCAAATCACAGCCCCTCTACATCATCACTGAATTCATGGCTAATGGGAGCTTGTTGGACTTTCTGAAAAGTCCACCAGGCAGAAAAATACGGCTGCCTAAACTGATTGACTTTGGAGCTCAAATTGCAGAAGGCATGGCGTACATCGAAAAGAAGAACTACATTCACAGAGACTTAAGAGCTGCAAACGTCCTCGTCAGTGAAAGCCTGCTCTGCAAGATTGCTGACTTTGGCCTGGCTAGGGTCATTGAGGACAATGAATATTCAGCCAGAGAAGGTGCTAAATTCCCCATTAAGTGGACTGCACCAGAAGCTATAAACTATGGTTCGTTCACTATCAAATCAGATATGTGGTCATTTGGCATCCTTCTCTATGAGATCGTCACCTATGGGAAAATCCCCTACACAGGTCTAAGCAACAGTGAAGTGATGGCACGAGTGCAGCGCGGGTATCGCATGCAGTGTCCTGATAACTGCCCATCTGAACTGTACGAGATCATGATTTCATGCTGGAAGGCCAAACCAGAGGAGCGGCCCACCTTTGACTACATGCAGAGTGTGCTGGAGGACTATTATACAGCCACAGAGGGCCAGTACCAGAGCCAGCCATGATACCATGCCAGATCCAAAACAGCCAAGAACATCatatagaattttattttttaataaacatgattGCCTCGACGCCCAGTGAGCAGGCTGAGGTCAAGTTTGCCAAGGAAACACTCCCTAGAATTgcacaaagaaagaagaaaccttgaaacaaagaaataagGAACTAAGATTCAGCAGGTGGAGCCTGtcctcctctgtgctgaaggaAGGCTGGTTGATCTCATTAAATGGACCCAATGCACATCAGTCAGCAaacaaggaagaaaaataactcattttttggctttttttttttttcaggtttgttAGTGATCAACATTAAAATTTGTGTGAGAAAGCTAAATGTAGATCAGTCCACCAACAGACGTTACTACTAGGAAAACCACGAAAATGTTCAAACAAAACTGCTCACAGCTCAGTCCAGTGTACAGATGTGATCCAGTTTAAAACACTCTCTGGCCGCTTTAAAAGGAATACCAGTACCTCTcccagttatccaatcagctaattatATGGCAGCAGCGCATTATACAAATTGAGGtccagatcaagagcttcagttaatgtttacattaaatattttattcgtGGAAACCATGATCTCattgactttgatcatggcctggttgttggtgccagacaggctggtcaCATGTTCAGGCAGATGGGCTCTAACAgatgatcacatttttttcccctgtcaaataggaatctgaggctacagtgggcacagactcgccaaaactggacaggttaagattggaaaaacattgccattgtctttttccagtcttcagcaaTCTGCCTCATGAGACACACATTGTGCAttcggagatgcttttctgctcaccatggttgcaaacagtggttatttgagatactgtagccttcctgtcagcagAAGagagtctggccattctcctctgaaggCATTTCTGCCCTATGTACAGATGCACCACAAAGTGGCTAGTGAATGTAGTCTGGAAAAGGATTGTGCTCCAAATGGTGGTTACTATTAACTTCTGAAAATAAGTTAACACCAAAATGTGTCCACAATGGTGTACAAGTGGAGACCATTTGAAGCAATGATGTTACATTTTACAGCCCAGAATTAGTAACCCAACCACCTTATGTTATACTATTGTAGGAATTTATATGAACCTTTTCAGTGCTCACAATTTTACTCTCAGAATACAAGATTGTTTGTGATAAAaagaatttattaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81220 lncRNA downstream 7858 21326076 ~ 21329250 (-) True G68462
TU81222 lncRNA downstream 7858 21326076 ~ 21329250 (-) False G68462
TU81229 lncRNA downstream 15962 21320818 ~ 21321146 (-) True G68466
TU81181 lncRNA downstream 23235 21304764 ~ 21313873 (-) False chchd7
TU80832 lncRNA downstream 520828 20778553 ~ 20816280 (-) False znf16l
TU81263 lncRNA upstream 56300 21407111 ~ 21408207 (-) True G68495
TU81290 lncRNA upstream 120821 21471632 ~ 21471839 (-) True G68519
TU81291 lncRNA upstream 122008 21472819 ~ 21473032 (-) True G68520
TU81365 lncRNA upstream 123776 21474587 ~ 21475776 (-) True G68577
TU81377 lncRNA upstream 146121 21496932 ~ 21501433 (-) True G68585
XM_026936598.2 mRNA downstream 23211 21304692 ~ 21313897 (-) True chchd7
XM_026936917.2 mRNA downstream 88471 21235253 ~ 21248637 (-) False LOC113540421
XM_026936918.2 mRNA downstream 93603 21235253 ~ 21243505 (-) True LOC113540421
XM_026936000.2 mRNA downstream 103423 21227985 ~ 21233685 (-) True sdcbp
XM_034303730.1 mRNA downstream 111126 21195948 ~ 21225982 (-) False unm_hu7910
XM_034304122.1 mRNA upstream 3808 21354619 ~ 21371010 (-) False LOC113539989
XM_034304123.1 mRNA upstream 13114 21363925 ~ 21371010 (-) False LOC113539989
XM_026936104.2 mRNA upstream 25584 21376395 ~ 21379959 (-) True sox17
XM_026937164.2 mRNA upstream 48744 21399555 ~ 21401268 (-) True sox32
XM_026936006.2 mRNA upstream 63050 21413861 ~ 21417828 (-) True mrpl15
TU81225 other downstream 7858 21326046 ~ 21329250 (-) False G68462
XR_003404107.1 other downstream 1193219 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 1371270 19962616 ~ 19965838 (-) False snrpf
XR_004578057.1 other downstream 1393741 19931590 ~ 19943367 (-) False LOC113539792
XR_004578106.1 other upstream 17439 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 17439 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 17439 21368250 ~ 21371004 (-) False LOC113539989
trnaa-ugc other upstream 67357 21418168 ~ 21418239 (-) True trnaa-ugc
TU81579 other upstream 583715 21934526 ~ 21935169 (-) True G68760

Expression Profile