RNA id: XM_034303980.1


Basic Information

Item Value
RNA id XM_034303980.1
length 3506
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC113540134
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28124082 ~ 28140907 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctccagtgtcagtgctttgtcacagagtcagtcactcacacacacacaagaatgaAGATATGAAGTCATTTGCTGTGATGGTGCTTTCCCAAGCTGAGAAATATCCAGGTCTTCAGATTCAGTCAGCTCATCAATTGTGAATCATGTCAGGAATGATCATGCTAGTCTGGAACGTCCTGTTGCTTTTTGCAGATGCTCTCTCTCACGAGGACTTTGATGCCTGCAAAAACAGTCCATGCCAAAATGGTGGTGTTTGCATAAGAAACAAAGGCGATTACACTTGCCAGTGCTCTAACAGTTCCCAAAATGGCCGACTCTATGGAGGACCAAACTGCACGGTTATACTGCAGGGCTGTGAGCGCCACCAATGCCAAAATGGTGGCACATGCTCTCCTTTTCTCAGAAGCAGTCAACACAGATACAGCTGCAACTGCCCTGAAGGTTACACCGGCACAAGGTGTGAGATTTCCACCACGTTTTCTTTTGAAAAGAGCGGATTCCTACACATCGAAACAGCCCTTGAGGATACATTGGTACTTTTGAACATTACTTTGAGTTTTCGCACGGTGCAAAAAACAGCGACTCtactgcactgtgaagtggatGAGTACGTACTCAAGCTGCAGTTGCAAAATGGCCGACTACGTCACTCCATGCAATGGGGCAACAACAACCAGTCAGATCTGGTGGACCTTTTTCAGGATGTAGCAGATGGCCACTGGCATATGGTGCAGGTTTTCTTGTACAAAAGTGTGCTGGGACTTGATTTGCGTGACCCACTGTGCACAGCGAAAACCTGCCACAAAGAAGCACTAGTGGAAATGGATCTGGGGTCTGGGTCAGGACAGTCCTCTTTCACTCTGATCCAGAGTGTCTATATAGGTGGAACAGGAAATGGACAAGTAAATCCAGACTCATATTTCCTGGGCTGCATGCGGGATGTCTACATTCAGTCCCGCCCAGTGGTTCTGGAGTTAAAGGTCAGAGCTGAGCAGTTCGGTGTGACTTTGGGCTGTAGGGAAAGTGACGGCTGTGAGGACAATCCATGCAAGAACAGAGGGAAGTGCATCGGCTTAGGATGGAAGAAACACAAGTGCGAGTGCCATCGTCCCTACGAGGGAAGCGTCTGCTCCGAGGAACACATCGCTGCACAGTTTGGGAATGAAGATGTGGAAAGCTATGCAATTTTTTATGTGGACGATGACCCCATGGACACTTTCACCATCTCCATGTTCATTCGCACACGCCGTTTAAACGGTCTGCTCCTTGTTTTTTCGAACAGCACGAGCCGTTACCTGCACGTATGGCTGGATGGTGGGAAAGTCAAAGTTCAGGTGAATCACTTTGAAATCCTACAGGGTCACGACAGAGTTAATGATGGACACTTTCACCTGGTGAGCGTGCATGTGGCACAGGGAATGCTCACGCTCTTGCACTCCGCTAGGACTCAGGCCTTGATGGCCAGCCAAGGTTTGACAGTTCGATCAGGTGACATGGTTCATGTGGGAGGCTTAGAGGATCGAAAAGCCTCATTAGCATTCAGGGGCTACTTTAAAGGATGCATCCAGGACCTTCGGCTGAACTTCAATCACCTGCAGTTTTACCCAATCAGCACTCCACTGGCTTCCTACAGGCTCAAGACAATTGTGCAGGTCACACAGGGCTGCACTGGTGATAATTACTGCAAGaTGAAACCCTGTCTTAATGGTGGTGTGTGTTACTCCATGTGGGATGATTTTACCTGCAGTTGCCCTCCAAACACAGCAGGGTGGCGCTGTGAGAAGCTGAAGTGGTGTGAGCTTTCCCCATGTCCCGTTAATGCAGGGTGTCTCACACACGCTCAGGGATTCGACTGTGTTACAAACGTCACTTTCCGTGAAGGAAACCCCATCATCTTGTTTAGAGGTAACGGCAAAATCCGCCGCCCCCTCCACAGCGTATCGCTGACGTTCCGCACAAGGAGCCATGACGCTACACTGCTGCATGCCTCACGAGAAAACGActtcattacagttttcctcAAGGACGGACAACTTGTTCTGGAGCTTCAGAGTGGCACAAACTTCTCACTCTGTGTGCAGAGCcaCCGGGTAGTGGTGAACGACGGACGTTGGCACAGTGCCATCCTGAGCATGAACAACCCATCCGCGCTGACCTCCAGGTGGTCCATGGTCCTTGACGAGCGTAGAGACCAAGCGTCCATCTCCTACAACTCTTCTGGAGATCTGGGCTTCCTGAGGGAAGACACAGACATCATTTTGGGTGGCTGGGAACTCAATACTGGGGCGAATTTGGATGGATGTCTGGGTTCGGTGGAAGTTGGTGGCCTTGTTTTGCCATTTTATGCAGAGACAGAACTTAATATGCCCAGACCTCAAGAGGAAAAGTTCTTGAGGACATCTGGAATGCAGAACTTAGGGTGTTGGAGCTTTGATATTTGCAATCCGAACCCTTGCCACAATGGAGGCCAATGTGAAGATCTTTTTGACCTCTTTAAATGTCGATGCCCAGCTGATTGGCACGGTCAGATTTGTGAGGTCAGGACTGATGCTTGTTCCTCGAATCCTTGCCTTCATGGAGCCTGTGTCATTGTTTCTGAAGgttacgagtgtgtgtgtgagtcaggaTACATTGGTCAGCACTGTGAAAATAAAGAGGACGTATGTGTGGGACACAAGTGCCATAATGGAGGTACCTGCCTCAGAGGAATCAAACAATATGCCTGCCTTTGCCCGAGAAACACAACCGGAGCTCTTTGCCAAGAACGAATGGCAGAAATGCCTTGGTACATCGACAGGTTTCCGTCTCCTAGGTTGCCGGTCTCCATCTGCGGCAATGACAAGTGGActtacagctgctttaatggTGGAAACTGCTCCATGTTTGAGGACAAGTGTGACTGCCTGCCTGGTTTTACTGGACAGTGGTGTGAGCTGGAGCTGGACGAGTGTGCGTCTGGCCCATGCCTGAATGGCGGATACTGCCGCAACCTCATCAACAaattccagtgtgtgtgtgagatcagctTCGCTGGCGAGCGCTGCCAGATCGACATCAGCGATTTCTACCTCTATAGTTTCCTGCTGATGTGGCAGAACATCTTCCAGCTGCTCTCCTACCTCATCCTGCGCATGGACGATGAGCCTGAGATCGAGTGGAACGCTGCCAACGAtgagtaaattaaaaaacagaggAGTGAGTGACGAGGGACGAGAGACAGGTTCTCTAAATATGGGCCAGTGGGTTGTATTTAAAGAAACCCAGCATGAAAGTAGAAATCGGAAATAGTTATGTCATTCATTTTATGGCGTATGAGCAGTGTTCTTATTTGTAATGGATGGTCataatgtgtacattttataaatacaaaatataatgtgtaactgacagaagtttaaaaagaaaagttctctcagaaataaagtacACAATTTCACATAAGACACATTCAGTGTCtgaactttctttcttttgtttttctctggAGCTACCAGACTAATGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86124 lncRNA downstream 12610 28081544 ~ 28111472 (-) False G72658
TU86171 lncRNA upstream 57084 28197991 ~ 28199809 (-) False LOC117597043
TU86175 lncRNA upstream 58312 28199219 ~ 28199809 (-) False LOC117597043
TU86202 lncRNA upstream 202227 28343134 ~ 28383460 (-) True G72709
TU86215 lncRNA upstream 224750 28365657 ~ 28379132 (-) True G72720
TU86223 lncRNA upstream 256754 28397661 ~ 28471771 (-) True G72726
XM_026936392.2 mRNA downstream 1979 28117092 ~ 28122103 (-) True ahsg2
XM_026936705.2 mRNA downstream 30145 28087411 ~ 28093937 (-) False tsc22d2
XM_026936704.2 mRNA downstream 30146 28075616 ~ 28093936 (-) True tsc22d2
XM_026935893.2 mRNA downstream 59553 28056712 ~ 28064529 (-) True cpdp
XM_026937117.2 mRNA downstream 82297 28016064 ~ 28041785 (-) False prkag2b
XM_034303545.1 mRNA upstream 16922 28157829 ~ 28170981 (-) False LOC113540126
XM_034303544.1 mRNA upstream 16922 28157829 ~ 28169477 (-) True LOC113540126
XM_034303542.1 mRNA upstream 32414 28173321 ~ 28196057 (-) True LOC113540124
XM_034303543.1 mRNA upstream 34029 28174936 ~ 28196057 (-) False LOC113540124
XM_034303546.1 mRNA upstream 57116 28198023 ~ 28225603 (-) True LOC117597043
XR_003404039.2 other downstream 82297 28016064 ~ 28041785 (-) False prkag2b
trnat-ugu_9 other downstream 499274 27624736 ~ 27624808 (-) True trnat-ugu_9
trnat-ugu_7 other downstream 502954 27621056 ~ 27621128 (-) True trnat-ugu_7
XR_004578066.1 other downstream 568096 27547752 ~ 27555986 (-) False pcyt1aa
XR_003404034.2 other downstream 691404 27428420 ~ 27432678 (-) False LOC113540508
trnas-uga_1 other upstream 95279 28236186 ~ 28236267 (-) True trnas-uga_1
trnas-uga_2 other upstream 95817 28236724 ~ 28236805 (-) True trnas-uga_2
XR_004578096.1 other upstream 507417 28648324 ~ 28652425 (-) False LOC113540437
XR_004577984.1 other upstream 732671 28873578 ~ 28882164 (-) True LOC117597037
XR_004577982.1 other upstream 732673 28873580 ~ 28884965 (-) False LOC117597037

Expression Profile