RNA id: XM_034303719.1


Basic Information

Item Value
RNA id XM_034303719.1
length 3224
RNA type mRNA
GC content 0.45
exon number 27
gene id unm_hu7910
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21195948 ~ 21225984 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGCACTGATTGGCTACAAGCTCCAAGAGCGCCGTTTATCCTATTATACATTGGGCGAAATCTTAAAGTGTCAACCTCACACGGAAACACGTAGTTTAGCTGCAGATTTTGTCCTTGTTTATTGTGATATTTCAGCACAGGAGCCTGGGAACTTTAAATAAGGGTTAAAGTTGAACTTTTAGGTTGCACTGCATTCCGCCATCTCCGCCATGGGCCATAAGAAACCTGCACGCAAACAGGCTAGAAAAGGTTTCTTCTGAACCACTTAGTGTACGATGGGAGTAACGCAAGCAGATGGAACCAAAATGGCAAATGTAGAAGAGCCCCAGGCAGTACCTGCTGTCGGTAAGAGCCCCAAGAAATCTGAGGGACACTCAATCTTCAGCTGGCTCATCGTGTTGGCTCTGTTGGGTGCCTGGATGTCTGTGGCTGTTGTCTGGTTTGACCTAGTTGAATACAAAAATGTTGTGGGCACACTTGGAAAATTTTATGAtgctgatggtgatggtgaCTTTGATGCGGAAGATGCCAAAGTTCTGCTGGGCTTGCCTGAATTTTGCAAGGGCCTTgtctctgtgcacaaagagagcgATGATGCTTTAGCAGATGGCAGTTCTGATTTGTTAAAAAGCTTCCTGGCAtttctgtgtgatgtgctgATGCCATGTGAGGGTGGAGGCGATGGAGAGAGTGTTatgaaggaggagaaggagagggtCACTGaatCAGAGAAATCACCTGTGACCACAGAAAGTAAGAAAGGAAGCAAAGAGAATATTTCTGTGACCTCTAAAATAAAGAGTGCAAGTAAAGCTGAGAAGCATAAAGAAGAGATGCTTAAGAAAATTAAAGGGCTAAAGGAGAAAATtgtctcagaaaaaaatgaagagccCACCAAAACAGCAGataCATCAGTTGATCACAAGGCAGAAGAAAAGCCTCCAGTAGAGAGCtacaaagaaacagaaagtgaAGTAGAGAAAGATGAAAAGCCTGTGCCTGTTGCATCCTTTAATGCAGACAAGGTAGATGCACCATCATCTTTTCAACCTTTTGattcacAAGAAAGCATTGACAGCACTGGAGaattAGTTGTAGAGGCTTTACCGGAGAAAACGTTAGagCTGTCTGCAACAGAAAGATACCAAAGTGAAGAGTCGTACTATAAACAGCTAGAAAAAGAGCTTGCGGATATTCTAGCTGATGAGAATAAAGATACACCGGAAAATAAAGCTCCAGAGATGATGCTTGAGCCCCAGCCTACAGTGGTACCTGAAGTGGCAAGTGACTTGACACCAGGGACTATGACTGAAACATCCAAACCTCAAAGTACTTCAGAGTCTACACAAGAATCTACACCTGGGATGACACCGGAAACAGAGGTTAAGAAGAAAAAGCCAAGCCTCCTCAATAAATTtgacaaaacaataaaatcagaAATCAATGCAGCTGAAAAACTGCGTAAAAAGGGTAAAGTTGAAGAGGCTCTGCGTGCCTTTGAGGCTCTTGTGCAGAAATATCCTCAGAGTCCCAGGAGTCGCTATGGCAAAGCTCAGGCTGAGGACGATATGGCTGAGAAATTGCGTAGTAATGAGATGCTCCTGAAGGCTGTAAACACTTACAGGGAGGCAGCAGAGCTCCCAGATGCTCCTGCAGATCTTATCAAAGCCACATTAAAGAGACGTGCTGACAGACAGCAGTTCCTGGGACGTACAAAGGGCTCTTTAGCTACCTTGGAAAGGCTTGTGCAGATTTTCCCAGAGGACATCACTCTGAAGAATGATCTAGGGGTGGCTCATCTTCTGATTGGTGATAACAACGGCGCAAAACGGGTCTATGAGGAGGTTTTGGCTATGGCTTCCAGTGATGGATTTGCCAAAGTGCATTATGGATTCATTCTTAAATCTGAAAATAAGATAGCAGAAAGCATACCTTACCTAAAGGAGGGTTTGGAGTCTGGGGCACCAGGAACTGATGATGGAAGATTTTATTTTCACCTTGGGGATGCACTGCAAAGAGTGGGAGACCCGACTCGGGCTCTTGAATGGTACGAGGCTGGTTACCGACGTGGTCATTTTGCCTCTGTCTGGCAGCGGTCACTGTATAATGTGCCAGGACTGCGAGCTCAACCGTGGTGGACAGCCAAAGAAACTGGATACACTGACCTTGTTCGGacaCTGGAGCGGAACTGGATGACCATTAGAGAGGAAGCGTTAGCCGTGTTGGACACTAACAGTGGGCTCTTCTTGCCAGAAGATGAAAATCTTAGAGAGACGGGAAACTGGGGCCAGTTTACACTCTGGCAGCAGGGACGGAAAGTTGGTCCTTCATGTCAGAGTGTTCCCAAAACCTGTGCTTTAGTGGAACGTTTCAAAGAGGCCACCACCTGCAAGAGGGGCCAGATCAAGTTTTCAGTGATGCAGCCTGGTACACATGTATGGCCTCACACTGGACCCACGAACTGCCGTCTGCGTATGCACCTGGGTCTCGTCATACCCGCTAGAGGCTGCCGAATCCGCTGCACCAACCAGACTCGAGAGTGGGAAGAGGGAAAGGTGTTGATATTTGATGATTCGTTTGAGCACGAAGTGTGGCAGGATGCAGACAGCTACAGGCTCATCTTCATTGTAGACGTCTGGCATCCAGaactcagccaatcacagaggcATGCCCTGTCCCCCATATGAAGCTTTAAATCAAGTGCAAAGACTTACTGTGATGCCTCAGCCAATTTCAGCCACAAGCCATCCCTGACCTCCGGCTGATCTCTGGTACTGAACAAAATGCCACCTGAATATATGCTGTGTTTTTAATAGAGTAATTTAATTATGATGTATGAAGAACAGGGGTAATGGATGTTGTCCTTCTGGTGTCCTGGGTTTTGAGTCAAAAGGAAGAAAAGGTGGCCACGTTACAGCTGTTTCATGTTTAGCAAATCTTGGGAATATGTATGACCAATTAAAATGAGTGGATAAAATTCCACACATGAAGATTTACAGATGTGATTTATGATTGAGAGAAGTAATGTAGCTCTGAATAAATGAGACCAAAGTGAAGGGTTATGCAGTAGGACGTAGGAGAATGTGGACCACTGAAGGTGCAAACACTGCatattactgtaaatttactTGAATATACACcattgtccactttattaggaacacctttacaactgcatattcatgcagttatctaatcagccggttactatagacttcctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80832 lncRNA downstream 379668 20778553 ~ 20816280 (-) False znf16l
TU80840 lncRNA downstream 391844 20803417 ~ 20804104 (-) True G68186
TU80746 lncRNA downstream 559749 20635904 ~ 20636199 (-) True G68108
TU80745 lncRNA downstream 560155 20635532 ~ 20635793 (-) True G68107
TU80738 lncRNA downstream 564238 20630166 ~ 20631710 (-) True G68106
TU81181 lncRNA upstream 78780 21304764 ~ 21313873 (-) False chchd7
TU81229 lncRNA upstream 94834 21320818 ~ 21321146 (-) True G68466
TU81220 lncRNA upstream 100092 21326076 ~ 21329250 (-) True G68462
TU81222 lncRNA upstream 100092 21326076 ~ 21329250 (-) False G68462
TU81263 lncRNA upstream 181127 21407111 ~ 21408207 (-) True G68495
XM_034303657.1 mRNA downstream 7170 21168890 ~ 21188778 (-) True nsmaf
XM_026936860.2 mRNA downstream 7172 21168890 ~ 21188776 (-) False nsmaf
XM_034303385.1 mRNA downstream 89599 21017886 ~ 21106349 (-) False ank2b
XM_034303382.1 mRNA downstream 89604 21015077 ~ 21106344 (-) False ank2b
XM_034303390.1 mRNA downstream 89616 21014991 ~ 21106332 (-) False ank2b
XM_026936000.2 mRNA upstream 2001 21227985 ~ 21233685 (-) True sdcbp
XM_026936917.2 mRNA upstream 9269 21235253 ~ 21248637 (-) False LOC113540421
XM_026936918.2 mRNA upstream 9269 21235253 ~ 21243505 (-) True LOC113540421
XM_026936598.2 mRNA upstream 78708 21304692 ~ 21313897 (-) True chchd7
XM_026936370.2 mRNA upstream 111124 21337108 ~ 21350811 (-) True LOC113540120
XR_003404107.1 other downstream 1052059 20143784 ~ 20143889 (-) True LOC113540737
TU80179 other downstream 1230110 19962616 ~ 19965838 (-) False snrpf
XR_004578057.1 other downstream 1252581 19931590 ~ 19943367 (-) False LOC113539792
TU81225 other upstream 100062 21326046 ~ 21329250 (-) False G68462
XR_004578106.1 other upstream 142266 21368250 ~ 21371010 (-) False LOC113539989
XR_004578104.1 other upstream 142266 21368250 ~ 21371010 (-) True LOC113539989
XR_004578105.1 other upstream 142266 21368250 ~ 21371004 (-) False LOC113539989
trnaa-ugc other upstream 192184 21418168 ~ 21418239 (-) True trnaa-ugc

Expression Profile