RNA id: XM_034303687.1


Basic Information

Item Value
RNA id XM_034303687.1
length 6481
RNA type mRNA
GC content 0.48
exon number 24
gene id slc4a2a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23859872 ~ 23899907 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTGTTTTCGACTTTGACTTTAACACTAAAACTGTTTAAATGACTGTCATTATTGTCTGTGAAAAgaatttctgaatttattttcatttcttattcTCACTGAGTGTAAACGGAAAGGACATGTTTTGTTTCAGGTTGTTTTTGTCGGGGATATAGAGGCTAGGAGTGGGCTGGAGCTTCCTTCAGTCATTCATACTTCGTCTCCTGTCTCAGTTAGCTAGTCACACCGCGGGCACTTGAGCTACACAAGCTAAACAAGTCATTTGGTGGATTTTTATGGCGGTTCAGAGAATATATGGAGCGTTTGTGCTGAGTGTCTAAGCCAGGCTACAGGACTGGGTTTGTAATGATGCAGCATCCACGTGTTTGAGCTGGAGAGACAGTTTCGCCTCGGCGTGAAGCCACACGACGCAGTTAAGCCCGACCTACACGGCCACGTTTACTTTCCCCCCTCGCTCATTTTCTTGGCTCTATTTGTGAACCCggcccttttttttctcttaaatttCCTCGGAGAGATTCCACTGAACGTTTTtgagagtttttctttttttcatttttataaaaagcaTCCCCGGGGAAAGGCTGTAGTTAAACAGCACAGAAGGCTGGTGCTGTGCGCCAGACAGCTGCTCTCACGTAGGCTTGCCATCGCACTACAATGACCGCTGTGGCTGTAGGCTCCCTGCAGTAAGCACTTAAAGGTTATGCTGTCCGAAACCTCCCAGCTGAGTCtgagcaaaagagaaaaaggctAACGCACAATCACAAGagacacgcacgcacacagcACACCAAGCCATGAGTGACGCTCAGGACACTGGAGACACCATTGCCACTGCAGGACTGGCTGGACACTTTCCGGCTGCAGTGCCCCTTTCTCCCCGTCGGCATGGTGACCACATTGATGACGAAGATGACGGGGACCTGAATAAGACTCTGGGAGTGCAGCGCTTCCAGCAGATCCTCTCCCCAGCACCGCGGCTACCTGCCGAGCAGCACCGCACCTTCAACCAGGAGGACTTAGAAGGCCACCGCCACTTGCCCCTGCATATCCATCACCCGCTATCCAAACGGCTGCCCTCTGAGAGCCGGGGGAAAAAGGGCGGACGCAAGAGGAAGAGCGGGAGGAGGAGGGGCTCGGCCAGCAGCGGCGGAGCTCCCACCATAGAGGAGGATGAGCAAGAGGAGGAAGTAGAGGAGGACCATTGCAGCCCACAGGATGGGGAAGGCAACACCACCACGCCTACACCTGACACCGATACAGATGCTCACACAGAACCAGTGCagTTCTTTGTGTGTGATGAAGACTCCAATGTCACTACTGTGGTCAAAAATAACCAGAGTACTCCAGCTCGCCAGCTTGCTATCGTCCCCGAGTCAGCACTACACAAGAGCAGCACTAGCCCTGAGGATGCCACTACAACTGATAGCGACAGCGTGTGCGTCCAGCCCAATGGCAGGACGGCGTCTGTTCCGTCGGGGTGCCCGCTCACGTCCCCTGATGCCAGCTCGAGGTTGGCGCGCAGCTACGACCTGCAGGAGCGCCGGCGCACAGGAGATGTGACAGCCACTGAACTAACACACTACCAACACATGCCGACTGATGAGAGCGAAGCACAGATGCTGGCCACCGTCGACCTGGACGGCATGAAGAGTCACCGGTTTGAAGATGTCCCTGGCGTACGGCGTCACCTGGTCAGGAAGTGCAGTAAGGGGCAGGTGGTTCACATCAGCAAGGACCACAAGGAACCGAGCGGCCGCAGCCGTAAACTGGACAGAACCCCACACGAGGTGTTTGTGGAGCTGAACGAGCTGGTGATGGATAAGAATCAGGAGATGCAGTGGAGAGAGACAGCCCGCTGGATCAAGTTTGAGGAGGATGTGGAGGAGGAAACGGACCGCTGGGGCAAACCACACGTAGCCTCGCTGTCATTCCGCAGCCTGCTGGAGCTGCGTAGGACCATCTCACACGGTGTCGTACTGCTCGACCTGGACCAGAGGACGCTGCCTGGCATTGCTCATCAGGTGGTGGAACAGATGATCATCTCCGACCAGATCCGAGCAGAAGACAGAGCCAACGTGCTCCGAGCACTGCTGCTCAAACACAGTCACCCGAGTGATGGGAAGGAACACAACTCATTCCACAGGAACATCTCTGCGGCGAGTCTCACCTCTCTAATGCctcatcaccatagcaacaaccaTGTCGCCCCCCCAGAACCTTCTGCCGCTGACCCGCTCATAGCAGGAACCACTGAACCTGACTCCCACTCCTCCGTCGACGTCGACAAGAACGAGAAAGATACTCCTCTAGTGCTGGGCTTGCACAAATCCAAATCTAAGCACGAGCTCAAGCTTCTGGAAAAGATCCCGGAAAATGCAGAGGCCACCGTCGTGCTTGTGGGCAGGGTGGACTTCCTGGACCAGCCGTCCATGGCTTTTGTGCGGCTGCAGGAGGCGGTGCTGCTGGAGTCGGTGCTGGAGGTGCCGATACCAGTGCGCTTCATGTTCGTCCTCCTCGGCCCACCCATCGCTAACATGGACTACCACCAGATCGGGCGCTCCATATCCACCCTGATGTCTGACAAACAATTTCATGAGGCAGCATATTTGGCAGATGAGCGTGGGGACCTGCTGACCGCCATTAACAGCTTTCTGGACTGCAGCATCGTGCTTCCTCCATCAGAGGTAGGAGGTGACGAGCTGCTGCACTCTGTGGCTCGATTCCAGCGAGAGATGCTGCGCAAGAGACACGAGCAAGAGGTCAAATTACAGGCCAAAGAACCCAAGAGGCCTGAGGATGAGGCTCTTCTGCCCCCAAGTAAACCCGTAGACGACCCCCTGCGGAGGACGGGACGCCTGTTTGGTGGGGCCATACGAGATGCACGCAACCGTTACCCCAAATACCTCAGTGATTTTAAAGATGCCCTCAACCCTCAGTGCATGGCTGCTGTCATATTCATTTACTTTGCTGCCCTCTCTCCTGCCATTACCTTTGGAGGACTGTTGGGTGATAAGACTGAGGGCTTGATGGGTGTATCGGAGTTAATCGTGGCCACTGCAGTACAGgggattttgttttgtctgcTTGGAGCTCAGCCCCTCCTTGTGGTTGGCTTTTCTGGACCTGTGTTAGTGTTTGAAGAGGCGTTCTATTCTTTCTGTACGTCCTATGGAATGGAGTACCTGACGGGACGGGTATGGATCGGGTTTTGGCTGGTAATTATCGTGGTGGTTATTGTGGCCTTTGAGGGAAGCTTCCTGGTGCGTTTTGTTTCCCGCTTCACGCAGGAGATCTTCTCCTTTCTCATCTCCCTAATCTTCATCTATGAGACCTTTGCGAAGCTTGCCAAGatcTTCAAAGACCACCCTCTCACCTCTTGCAACAGCATAGCAGAAAATGACACTACACCAGAGTTCCTGGTCAACTCCAGCAGAACTCAAGACATACCTGGGAAAGTGTTGAACCAGCCCAATACAGCCCTGCTGTCCCTCGTGCTAATGTCAGGAACCTTCTTCATTGCCTTCTACCTGCGCAAATTTAAGAACAGCGCCTTCTTCCCTGGCAGCCTCCGCAGGGTGATTGGAGATTTTGGTGTTCCCATTGCTATCTTCATCATGGTTTTGGTGGATTATAGCATAAAAGACACCTTCACCCAGAAGCTGAGCGTGCCGGACGGCTTCAGCGTGACCAGCCCAGAGAAACGGGGCTGGGTGATCAACCCGTTGGGCTCTGACGGTCAGTTCCCAGTCTGGATGATGGCTGCCAGCATTCTGCCTGCCCTGCTCgttttcatcctcatcttcatggAGACACAGATCACCACTCTTATTGTGAGTAAAAAGGAGAGGATGCTGGTGAAGGGGTCTGGCTTTCATTTGGATCTGTTGATCATCGTAGCCGTGGGTGGGATCTCAGCTTTGTTTGGCCTGCCCTGGCTGGCTGCTGCGACCGTGCGCTCCGTGACCCACGCCAACGCCCTCACTGTCATGAGTAAGGCTGTGGCACCCGGCGATAAACCACGCATCCAGGAGGTAAAGGAGCAGAGAGTGACTGGACTTCTGGTAGCAATTCTCGTTGGTCTTTCTATTGTGATTGGGGATGTGCTAAGGAAGATCCCCATCGCTGTTCTCTTTGGCATTTTTCTCTACATGGGGGTTATGTCCCTCAACGGCATCCAGCTGACTGAGCGcatgatgctgctgctgatgcCTCCCAAATATCACCCAGACCATATGTATGTGCGGAAGGTGCGCACTCTACGGATGCACCTTTTCACAATGATCCAGGTGGTGTGTTTGGCTGGGCTCTGGGCTGTCATGTCCACCCAGGCCTCGTTAGCGTTCCCCTTCGTCCTTATCCTCACCGTGCCCATCAGGAGGTTCCTGCTGCCGCGGATCTTCAACCAGCGCGagatacagtgtcTTGACGCAGATGACGCAGAGCCCACATTCAACGCGAGGGAGGGGCAAGACGAGTACACGGAGATGCACGTGCCAGTATGACGCTGATCACGCCACTCTGACTGACACTTATTCTGGGTGAATGAGTGGAATCACAGATACAATCCTAGACTTTTCAGTACGTTATCTTGTGTAAGACGTTGACCAGTCAGTGACTGTGTCACTGTAGCTCTGTTCCCAGAAGCATGAGCATCATGCCTATAGAATCATTTTATAGCTTTGTGTCCATCTCGAATTTTAACTGATAGTAAAACTATATTTGCGTATTTAACGGTTGCCTGGTTGTCAGTATATAGTTGTTTATCCACGAGGTTTAGTGTGTACTAACACCTGGGGTTTGTATAATTGTGTAGCGAGTGTGAAATGTGACACCTCCCCCTCTCCCCCACACGAAGCACTTTATGACCAAtcataatgctttttttctgttattgatTTTTCATCTTACTGAAACCAGGGTGAAATGTTAATGTAGGCTGAACAACTATCAAACATTATTTAGGTAGCAAAGCTATTGgcaagtgtgttttttttttttttttttcggaccAGCACTGAAAAGAAAGCAGTTGTTTTTGCAAAACTCAGTGTTCTTTAATGACTGTATATTTCAAATCTGTTGTGAAAAGTATGCAAAGTTTTTGACAGTAACATGCAATTCTGGTTCACCTCTCCCAACCACCAGGGATGGTTAATATCACCTGATATCTTCTTGTGAGACTAAGGAAGGGTGAAATTATATGCTAGTTAAGTGTTTAACTATGATTTGTAAGTATGTAACTAGTTCTCTGTCATTTGGACCCAGCACTAATCGAACAAATTACTTATTGCAAATACTACACTTTGTGACTTAGTAGGAAGTTCTCAGTATgtatgcacgcgcacacacacacacacacacgcgcacgcgcacacgcacatgAACAGATCCAGGTGATGTTTAATTTCCCTGGCACTTGTCTGGTGatcacagaaccacagttacatatgtaactagtGTTATCTtctatatatctttatatatttaaagccAAAAAAGTATCAAGAGACCAGTGTATAGAAACCTGCATTATTGCTGTAGGGAGTTTAGCCATTCCCAAAATAGGAAAAGTCGACTGTAGGCTGTGTGTATCTTCCATTTGTGTGACTGAATCTGCTAAATTCTGAAATAAATGGctactgaatatatttttaatcatttgaaatGAATAGTAGTGTTTAGGACTATAAGTGAAAGTGATAAGGGATGATGGTACTCACCCTTGCCAGTTAGGTCaatgaatcacattttaaagGGTTCTGTGGTATAGGCTGGCAATGATAATAGGCCACATCTTAATACTATttcaagttttaaaataaacataggCATCTGATTCAAATGTTCATGTATAcgcaagtcttttttttttaaacattatgcCTGTTTATTTtagtctgtagtgtgtgattctttattaaaaaaagtttaagatcCAAAGATGCAGTACAAAGCTGAAATCTTGAACATTTCTGCatgttatgtgtgtttttttctttttggcctaattttatttttgtactttgTCAGTGACTtcataattttaaacatttaataggcAAAAGATGGATTATTTGTTACAAGTGCAATCTGTCTTACATTCCAACTATAACACTCAAACTGATTCTTCAAAAATCTtgaacaaaatgttattttacttATGTATGAAACTGTACATTTCCATTTGCTCCTGCCAAAAACATTTGTGTTGCAACCACTTGAGCTTATGATGTAGTGCCTTTTAATATGATGTTGCTGTAAAACGGGCCGGATGAAACTGTGTAGTCGCTTTTGCTTGATGATAAGTATGAAGCAGAAGTGACCTTGTTTGTTATTGTATGAATGATGGTGAAGAGTGAGACGGTGTGATTTGTGAGACTGGATCAGAATGACCATGATGTGACAGTGTGAAAGCAGTAATTCCTCTGTGTTTATACACAGTGCAGACTCAATAAAGCTACTCAACATTTCTA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006820 anion transport biological_process
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function

KEGG:

id description
K13855 SLC4A2, AE2; solute carrier family 4 (anion exchanger), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82692 lncRNA downstream 208006 23651051 ~ 23651866 (-) True G69691
TU82643 lncRNA downstream 265328 23594331 ~ 23594544 (-) True G69649
TU82581 lncRNA downstream 405651 23453233 ~ 23454221 (-) True LOC113540115
TU82956 lncRNA upstream 23468 23922106 ~ 23922538 (-) True G69916
XR_004578012.1 lncRNA upstream 32695 23931333 ~ 23932235 (-) True LOC117597086
TU83094 lncRNA upstream 239655 24138293 ~ 24138492 (-) True G70025
TU83095 lncRNA upstream 246940 24145578 ~ 24145784 (-) True G70026
TU83096 lncRNA upstream 247252 24145890 ~ 24146241 (-) True G70027
XM_034303708.1 mRNA downstream 1486 23845044 ~ 23858386 (-) False ubtfl
XM_034303714.1 mRNA downstream 2226 23845044 ~ 23857646 (-) False ubtfl
XM_034303713.1 mRNA downstream 2226 23845044 ~ 23857646 (-) False ubtfl
XM_034303711.1 mRNA downstream 2226 23845044 ~ 23857646 (-) False ubtfl
XM_034303706.1 mRNA downstream 2227 23845044 ~ 23857645 (-) True ubtfl
XM_026936459.2 mRNA upstream 8521 23907159 ~ 23919306 (-) False ttc19
XM_026936458.2 mRNA upstream 8521 23907159 ~ 23919306 (-) True ttc19
XM_026936460.2 mRNA upstream 8521 23907159 ~ 23918414 (-) False ttc19
XM_026936461.2 mRNA upstream 26442 23925080 ~ 23935101 (-) True faim2a
XM_026936462.2 mRNA upstream 27720 23926358 ~ 23935101 (-) False faim2a
LOC117597117 other downstream 327856 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 342202 23516930 ~ 23517670 (-) True LOC113540013
LOC113540114 other downstream 343513 23515699 ~ 23516359 (-) True LOC113540114
LOC117597116 other downstream 344937 23514374 ~ 23514935 (-) True LOC117597116
LOC113540012 other downstream 345833 23513456 ~ 23514039 (-) True LOC113540012
XR_003404116.1 other upstream 138080 24036718 ~ 24036854 (-) True LOC113540746
TU83344 other upstream 405736 24304374 ~ 24304926 (-) True G70255
TU84653 other upstream 2475120 26373758 ~ 26376088 (-) False ltb4r2b
TU84853 other upstream 2573442 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 2638464 26537102 ~ 26551030 (-) False G71596

Expression Profile