RNA id: XM_026936418.2


Basic Information

Item Value
RNA id XM_026936418.2
length 5487
RNA type mRNA
GC content 0.42
exon number 10
gene id rbpjb
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 15918848 ~ 15963968 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctcctcctcctccttcctccggCCCTCCTGGCCGCCCgccccctttctctctgtctccctcgtCCCTTCATCTCCAGTCCGCTTGTGTTGTCTCGGCGGCTGGTCGGTGTGGGAGAGCGGATCTCGCGAGTGTTGGAGTTTTGGTGAGAGTTTGTGGAAGATGGCGCCTGTTGTGACAGGaGAAGCGATGAGAAACTATCTAAAGGAGCGAGGAGACCAAACCGTTCTGATCCTCCATGCTAAAGTTGCACAGAAATCCTACGGCAATGAAAAAAGgTTCTTTTGCCCTCCTCCATGTGTGTATTTGATGGGCTGCGGCTGGAAGAAAAAGAGggaacagatggagagagatggctGCTCTGAGCAGGAGTCTCAGCCATGCGCCTTCATCGGCATCGGAAACAGTGACCACGAGATGCAGCAACTCAACCTGGAGGGGAAGAATTACTGCACAGCCAAAACATTGTACATCTCGGACTCAGACAAGCGCAAGCACTTCATGTTGTCGGTGCGCATGCTGTACGGCAACAGCGCCAACATCGGCGTCTTCCTCAGCAAGCGCATCAAGGTCATCTCTAAGCCTTCCAAAAAGAAGCAGTCGCTCAAGAACGCTGACTtgtgtatagcgTCTGGAACGAAAGTGGCACTGTTTAACAGACTGCGTTCTCAGACAGTCAGTACACGCTACCTCCATGTGGAGGGCGGGAACTTTCATGCCAGCTCACAACAGTGGGGAGCCTTCTATATTCACCTcttggatGATGAGGAATCTGAGGGAGAGGAATTCACCGTGCGTGATGGTTACATTCACTACGGCCAAACTGTCAAACTTGTCTGCTCCGTCACAGGAATGGCCCTGCCACGACTGATCATCCGTAAGGTGGACAAGCAGACGGCCTTGTTGGACGCAGACGACCCCGTATCTCAGCTGCATAAGTGTGCCTTCTACCTAAAGGATACAGAGAGGATGTACCTGTGCCTTTCCCAAGAGAGGATCATCCAGTTTCAAgcCACTCCATGCCCAAAAGAACCAAATAAAGAGATGATCAACGACGGTGCCTCTTGGACAATCATCAGCACAGATAAAGCAGAATACACCTTCTACGAGGGAATGGGTCCAGTCCACTCATCTGTCACCCCTGTGCCTGTGGTTGAAAgcttacagCTGAACGGTGGAGGAGATGTAGCGATGCTGGAGCTAACAGGGCAGAACTTTGCTCCAAACCTGCGCGTGTGGTTCGGGGACGTGGAAGCCGAGACTATGTACAGGTGTGGAGAAAGCATGCTGTGTGTTGTACCGGACATTTCAGCGTTCCGTGAGGGTTGGCGGTGGGTGAGACAGCCTGTACAGGTTCCTGTAACACTGGTGAGGAACGACGGCATCATCTACTCCACCACTCTGACGTTCACATATACGCCGGAGCCGGGCCCGAGGCCTCACTGCAGCGCAGCCGGAGCCATCCTGCGCTCCGCTAATAACACCCCCAACACTGACACACCAAATTCAGTCACGGCAAACTCTTCCAACGCCACGGCCGCTGTGGTCTCGTAACACACGTGGTAGCACTCAAGAACTTAGTGtatgggtgaaaaaaaaaaaaaaaaactacaggtACATTTCAACAAAGTGCTGCATATAGATTTCAAAACTGAACAATTTATTTGGGCAATGTAAACACAAAATCGAGGAATACGGAGAGTAAAAATGAACAGGGGAAAGCAAAGTGGTATGGAGGCGATGAGCTATTTGGAGCTTGGTGATGGACATGGCTGACACGGCTGAGAACACCTGCACCTGTCGAGATACAGAAGACGAGAACATCTGACCATAGCAATGATGCATTTAATCAAGAGGTCTCTACTCCACCTTTTATTTGAATTCCCTCTTTTCCCCCACACTTTcctgatttgtgtttgtgtgaaggaGTAAAAAGGCTTATCACCTGTGGCTTGGTCTGGACTTACGAGACGAGGGTCACgttaaatttgtaaatgaaacGTAGTTTTTATGGACCAAGGTTATTGTATAAGCTTTAGTAAAGGTACATTTTCCTccatacgttttttttttttttttgtatctaaACATATAGTACGCTTTTGTTACCAAATAGATTCTGTTCTTACTCTGAGTTTTTACACAGTTTtggttatcttttttttttttttcattagggATGTGGGCATAGCAGGGTGCTGTTGCCCTCTCTTGGCTTTTGTGTATAGCTTTTTTCATCTGTATACGTATAGATATCTGTATACGTATATCCTTTTCACATTTGCTCGGACTTCATTTTGATATTTCTCAATTTTTGATATGGAActtgtattttctttcttttttatttgaagtTGTTTTGCTTTGGGAAGAATCTCAGAGggtctatttttattattgatttttacaaattctctgaaaagaacaaaaaagctTTAAGCAACGCCTCTGCCTTGTCTGCAATATGACGTGTATATGCTTCCTTTAAGGATTTtataatagtgtgtgtttaggtgtcgCAGGAGGAGCAGCgacttctctcttcctcctgttCAAAACAGTGAAACCAGAACGCACCAGTCGCAATACAGAGGCGTGGAATGAGTGTGTCCACGAAACCGTAGCCATTCAGTACTGATCGTTTCCAACGCACACAAAGCGCATGATCTGAAGCAGCGCtgttgtgtttggatgctgttacCATCAGAGTGTCATAAGTCTGGActggacagattttttttcgGTTTGTGCTCTGAAATCATGCTGTCTCCTAAAACGTTTTTGAAATTCCTTTGTCTTcctaatttttaattttgctaatattatgttgaaatttttttgttacaaaGTGACTGGATTATTTGAATAAGTAATAATCTTCCATTAGATGTGGCCTTACTGTAACAACACATTTAGTTCAAGTGCAGTTCACACCTTAAGACCGTGGCCTGTGACTGTAAACTCTTGAGCTCAGccttgtgttgttgttgttgtttttttttctaaatctttctttttcttgattGTCATTAACAAGGCTGTTTCAAGTTCAGACTTGACACCCTTAACTTCTGCATGTCGTCAAAACTTTTAGATGCTCTCACATTAACATACCCAAAGATGTTGTGGCACGTAGTTGTTTCTGTGTGGAATTTTTGAAGAGTGTGTTGGCAGCCGTGGCCTCTCGTACACCAAAAGTAGAGCTTTACTTACGTCACTTATCGATTTGTTCCTCGTGGCCTTGCTAACACACTAATGTATATGAAAATTATTAATGCCAGCTAGGAGAAACTAACAAATCAGCCTGCTGTAGTAGTTTTGTACAGTAGATTAACTTATGAGGAGCATCACTATGCTTCCTTTTGCTAAAActatttgtatttcattgcGCCTGCGTCTACGGCTCATAGCCTAGCAACTGTGGTATCTGTTTTCTGAGCAATTTGGTGTGTGGTGACAAGAGACTAGAGAAGTGTCCAATAGAAGTTTAATGCCCTTTAGATGTATGTTTGTTGTTCAAAGATATATACATACAGCAATATTGTATAggttctctgtctctgtctgtgggAATACCCACTGATTTTCACCAGCCTGATCCACTGTTAGTGGTTATGATCAACAGCACACTCATCTTGAGTTCACTTTGCCCATTGCTTTACTTTAGACTAATATGCCGTCTGATTTTAGAACAATAAAACAACTTCCCTGCTCAGTTAGCGAAAGCTGAAGGACGGTCTTGAGCCGATGCATATCTAAAACcaatagaaacattttcaggACTACGTGTTTAGAACTACGAGTTTACTAGCAAAGAAAATGCTAGTCAGCTGTGCTGTTTGTCCATTCCTGACTGGAACTTTACGTTAAAAAAGTTTGCTAAAGGACAGCGTTCTTCCCTTTTTTCCGTTTCCTTTTTTACTAATATGAAAAGTAGCTTTAAAGtctaatattgtattttttaaattattaatgaaatcgCCTTCTTGTTTAGTGTGGCGTCACCAATGAAGTGCTTTAAGGCCAGCTTGCTtccaagtggaaaaaaaaatccccttaatatttgaatatacttaagaaatgagaaatggCCGTCGATCCTGTTTGTTTTCAGCTGTTTGAGGACGTTCTAAACAGTTCATTCTGTATAAAATGTTCTTCAGTAGCTCCATGTCTCAATTCACAGTGGTCACCTGAAGCAGTGGCATCAAGTTTCATTTGTATTGCTCTCCAAACAGGCATATATGACAATCCTAGCTGTTTTTTGCTGTTTACATTGACTTTGttgtctattttgtgttttgctgTGGAGCTTTAGAATGAAGGAATTTTCTAGAAAAGATTAAAACTGAACTGGGTGTGCTTTACATTACTTACCAAGTTGAAGAATGAATAGTCTGACAAAGCATCTTTTACTCATATCCATTAAGTAACGTATCTCGGAGAGTTCAGACGTATAGCGATACACGCATACACGCTTTTAACAACGTTGTGTATCGTCGTCACAGCAGTGAAATGTTACAACCCATTTCATCCCACCTCAAGTTACATTTACACAGTACGAGCTGTGACCATGCTCAGAATAACCacctattttattatttctgtctaTTTGACAGCTTTTGTAGTCCACTggtaacatttttcacatcatcTCACTTCATTTTCCATGTTTTACTTGGCTCTTCCAAATGCAGCTGTTTTTTATGAGCTCTGATGGATGTGTGTGCGTATGTCCTCTAATATGccaaatgactttttttaaactttgattTCATGCACTGCCCAAGAAAAATAGCACCAGAGGCAGCtttgggaaagaaagaaaaaaaaaaaactttcattgTATTAGAAGATGTGTTGTAAAAGCAAGTTGAGCTTCTTTGTGGCACAAAGcgttacaattttaaaatgctaaacaacatgcaagatctctctctctctctctctctctctctctctctctctctcgctactTTCAGTCAGAATAGACAGACTGCActcctctttttccttcttcatcTCTTTGTGGGTTTGCTCTGTGATACTTTTGCACTTATTCATTGTACCTACAAAGAATCTCATTTCTCTTATTCCTTCTTGCTGACTGTTGTGTGCCCAATTCTACagttgtgtctgtgtgcgcgCGAAAGCATAGCTTATGTCTGCATAATATTCACCTTCTTACATGAGTACAAGCCCCATCTCTCTGACTGTATTGTTCTAGTGATAATAAGCCGAGGTGTTGGTATGGTAGTGGTATCAGTCCTGCCAGTAGGATCCTGTGCCGTCTGTGATATTTTAGCAATAACATGAATCATTGGGGCAGTTTTTTTATATGTAGAACATTAGTTTCagttgtctgtttgtttgtttgtttgttttttttgtgtgcataTTGCACCTGCTCAGTTTCATATGtcattaaaggaataaaacaacttGCAATATTGGCATAAaaatcaagaaataaaaaaactgagaaata

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0072149 glomerular visceral epithelial cell fate commitment biological_process
GO:0039021 pronephric glomerulus development biological_process
GO:0039022 pronephric duct development biological_process
GO:0030325 adrenal gland development biological_process
GO:0022008 neurogenesis biological_process
GO:0060840 artery development biological_process
GO:0005634 nucleus cellular_component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76907 lncRNA downstream 717303 15201298 ~ 15201545 (-) True G64964
TU76869 lncRNA downstream 950309 14967207 ~ 14968539 (-) True G64929
TU76798 lncRNA downstream 1056649 14861924 ~ 14862199 (-) True G64860
XR_004578094.1 lncRNA downstream 1286095 14622036 ~ 14632753 (-) True LOC117597192
TU76369 lncRNA downstream 1623149 14295494 ~ 14295699 (-) True G64461
TU77256 lncRNA upstream 17768 15981736 ~ 15982273 (-) True G65267
TU77227 lncRNA upstream 25581 15989549 ~ 15991516 (-) True smim20
XR_003404045.2 lncRNA upstream 229124 16193092 ~ 16196596 (-) True LOC113540579
TU77434 lncRNA upstream 229124 16193092 ~ 16196466 (-) False LOC113540579
TU77449 lncRNA upstream 291983 16255951 ~ 16260298 (-) True G65416
XM_026936113.2 mRNA downstream 14493 15879472 ~ 15904355 (-) True tbc1d19
XM_034304110.1 mRNA downstream 14581 15879471 ~ 15904267 (-) False tbc1d19
XM_026937207.2 mRNA downstream 43364 15826058 ~ 15875484 (-) True stim2b
XM_026936693.2 mRNA downstream 473076 15310629 ~ 15445772 (-) True pcdh7b
XM_034303871.1 mRNA downstream 1029459 14875695 ~ 14889389 (-) False dthd1
XM_026936952.2 mRNA upstream 25894 15989862 ~ 15991985 (-) False smim20
XM_026936547.2 mRNA upstream 38191 16002159 ~ 16017892 (-) False tdrd7b
XM_026936544.2 mRNA upstream 38191 16002159 ~ 16017892 (-) False tdrd7b
XM_026936545.2 mRNA upstream 38191 16002159 ~ 16017892 (-) False tdrd7b
XM_026936543.2 mRNA upstream 38191 16002159 ~ 16017892 (-) True tdrd7b
XR_004578098.1 other downstream 14493 15879471 ~ 15904355 (-) False tbc1d19
trnap-ugg_2 other downstream 42950 15875827 ~ 15875898 (-) True trnap-ugg_2
trnae-cuc_13 other downstream 1184121 14734656 ~ 14734727 (-) True trnae-cuc_13
TU76338 other downstream 1675167 14232809 ~ 14243681 (-) True G64436
XR_004578131.1 other downstream 2009491 13909167 ~ 13909357 (-) True LOC113540747
XR_004577994.1 other upstream 9611 15973579 ~ 15991885 (-) False smim20
XR_003404041.2 other upstream 91054 16055022 ~ 16071692 (-) False acox3
TU77497 other upstream 455342 16419310 ~ 16423164 (-) True tnfsf12
TU77801 other upstream 640140 16604108 ~ 16605717 (-) False bmp15
TU78232 other upstream 1436626 17400594 ~ 17402464 (-) True G66053

Expression Profile