RNA id: XM_026936435.2


Basic Information

Item Value
RNA id XM_026936435.2
length 4480
RNA type mRNA
GC content 0.48
exon number 22
gene id pcxb
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14298897 ~ 14503829 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aacagagagaaagagagggctGAACATTGTATGCCAAACAGGACAAGGCCTGACATTCTTGTTCACTGTCTGCTGGAACAGCAACACTTCctctgactgtgtgtgagtgtatatgtgtgctcTGTGCAAATAGAAGCTTCATCAGTGTATCACACACCTCCTCAAGACCAAAGCGTCACTTTCTGCCTCATTCATCCATTTGTGACCTGAAGACTGCTCACTGCAGGTAAATTCAGgatGGTCTTGTATTTGGGAGTGGTGAGGCATGGCTTGGGCATGCTCTCTATCCGGAGAGCGTACTTGCTCTCACGCTGTGCCCACACCTCACCTCAGAGCCTTGACTACCGGCCAATCAAAAAGGTCCTGGTAGCCAACAGAGGTGAGATAGCAATCCGTGTATTCCGAGCATGTACAGAGCTGGGGATCCGGACAGTGGCTGTGTACTCCGAGCAGGATACAGGCCAGATGCACAGACAGAAAGCAGATGAGGCCTACCTGATTGGCAAAGGGCTGCCCCCTGTTGCTGCTTACCTCCACATACCTGACATCATCAAAGTGGCCAAGGAGAATAATGTGGATGCCATCCATCCAGGATATGGGTTCTTGTCAGAACGTTCAGATTTTGCTCAGGCCTGTGAGGACTCAGGGGTTAGATTCATTGGCCCAAGTCCTGAAGTGGTGCACAAGATGGGGGATAAAGTAGAGGCTCGTGCTCTAGCCATCAAAGCTGGTGTTCCAGTGGTCCCAGGGACAGATGCTCCAATATCCTCTCAGCAGGAGGCTCAGGAGTTTGCTAAGACCTACGGCTTTCCCATCATTTTCAAAGCAGCCTATGGGGGAGGTGGCCGTGGCATGCGGGTGGTCAGGGAGTATGAGGAGTTAGAGGAGAATTACCAGAGGGCATACTCTGAGGCTTTGGCTGCTTTCGGAAATGGTGCTCTGTTTGTAGAGAAGTTCATTGAGAAACCACGCCACATTGAGGTGCAAATtctagGTGATAAGTATGGAAATGTGATCCATTTGTATGAGAGAGACTGTTCCATTCAGAGACGCCATCAGAAGGTGGTGGAGGTTGCTCCTGCAGCTCATCTGGACCCTCATCTCAGAGACAGACTCACCTCTGACTCGGTTAAACTCGCCAAGCAGGTTGGCTATGAAAATGCCGGCACAGTGGAGTTCCTGGTGGACAAACACGGGAAACACTACTTCATCGAGGTCAACTCCCGTCTCCAGGTGGAGCACACTGTTACTGAGGAGATCACTGAtgTGGATCTTGTCCATGCACAGATCCGTGTGTGTGAGGGCCAGAGTCTTCCTGAGCTTGGCCTTAGACAGGATAAGATCAAGATCAATGGCTGTGCCATCCAATGCCGTGTCACCACAGAGGACCCGGCCCGTGGATTCCAGCCCGACACAGGACGAATAGAGgTGTTCAGGAGTGCAGAAGGAATGGGCATTCGCTTGGACAGCGCATCTGCGTTCCAGGGAGCAGTTATATCACCACACTATGACTCCCTATTGGTTAAAGTCATCTCAAGTGGGAAGGATCTGCCAACTGCGGCGAGTAAGATGCTCCGGGCCCTGGCAGAGTTTCGCATCCGTGGAGTGAAGACAAACATTCCCTTCCTGCAGAACGTTTTGGGTAATAATCAGTTTCTGCACAGCACAGTGGACACACAGTTTATCGATGAGAATCAGGACCTGTTCAACCTCAAACCCACGCAGAACCGTGCACAGAAACTCCTGCATTATCTGGGACATGTGATGGTAAATGGGCCGACGACACCAATCCCAGTCAAAGCCAAGCCTTCTACCACAGACCCAGTCATTCCTCCTGTCCCTCTAGgagaacCTCCTGCAGGTTTCCGTGAGGTCCTGTTGAAGGAAGGTCCTGAGGGTTTTGCCCGAGCAGTGAGACAGCATCAGGGTTTGCTCCTGATGGACACCACTTTCAGAGATGCTCATCAGTCTCTGCTGGCTACACGTGTCAGAACACATGACCTGAAAAAGATCGCCCCGTACGTCGCACACAACTTCAGCAATCTCTTCAGTGTGGAGAACTGGGGAGGTGCTACATTTGATGTGGCTATGCGCTTCCTGTCAGAGTGTCCATGGCGAAGACTGCAGCAGCTGAGAAAACTATTACCTAATGTGCCTTTCCAGATGTTGCTAAGAGGAGCTAATGCAGTGGGTTACACCAACTACCCTGACAACGCCGTATTCAAGTTTTGTGAAGTGGCAAAGGAGAATGGTATGGACATCTTTCGGGTATTTGACTCTCTAAACTACCTACCTAACATGCTGATGGGAATGGAGGCTGCTGGCACAGCTGGAGGTGTGGTGGAAGCAGCCATCTCTTACACAGGAGACGTCTCTGATCCCATGAGACAGAAATACTCACTGGAATACTATCTGCAGCTAGCAGAGGAACTTGTGAAGGCGGGGACGCATATACTGGCTATAAAGGACATGGCTGGTTTGTTAAAACCTGAGGCAAGTCAATTGCTGATCACAGCTCTGAGAGATAGATTCCCAGAAGTTCCCATCCACGTACACACTCATGATACAGCAGGTGCAGGTGTGGCGGCCATGTTGGCATGCGCTGAGGCGGGTGCTGATATCGTAGACGTGGCAGTGGACTCCATGGCTGGCATGACATCTCAGCCCAGCATGGGCGCTATAGTGGCCTGCACCAAAGGCACCAAACATGACACTGGGATTTCTCTGGAGAATGTGTTTGACTACAGCGAGTACTGGGAGGTCACTCGTGGTCTGTATGCTCCTTTTGACTGTACTGCCACTATGAAGTCTGGGAATGCTGATGTCTATGAGAACGAGATCCCAGGAGGCCAGTATACTAACCTGCACTTCCAGGCTCATAGCATGGGTCTGGGCAACAAGTTTAAAGAGGTGAAGAAAGCGTATGCCGAGGCCAACAAACTGCTGGGTGACCTTATCAAGgTGACTCCGTCATCTAAGATTGTGGGAGACTTGGCACAGTTCATGGTTCAAAACTCACTCTCTAGGGCCGAGGTAGAAGAGCGGGCAGATGAACTGTCCTTCCCTCTGTCTGTGGTGGAGTTTCTGCAGGGACACATTGGCATTCCTCACGGAGGCTTCCCCGAGCCGTTCAGGTCAAAGGTGCTTAAATCGCTGCCTCGGATCGAGGGTCGTCCGGGTGCATCCCTGCCCCCCATGGACTTCAAAAAACTGGAGGCTGATCTACGTGCAGCACATGGTGAGGACATCACGCCTGAAGATGTGATGTCAGCAGCCATGTACCCAAAAGTCTTTCAGGAGTTTAAAGAGTTCACATCTAATTTCGGGCCCGTCGACTGTCTCAACACGCGCCTATTTCTCGATGGACCAAAAATTGCAGAGGAGTTCCAGGTTGAGCTGGAAAGAGGAAAGACATTACATATCAAAGCCTTGGCTTTGGGGGACCTGAACAAAGCTGGGCAGAGGGAGGTGTTTTTTGAGCTTAATGGTCAACTGCGGTCCGTCCTAGTCAAAGATATGGTGGCTATGAAGGAGATGCACTTCCATCCAAAGGCTTTGAAGGACGTCAAGGGTCAGGTGGGAGCCCCCATGCCAGGGAAGGTGGTGGAGGTGAAGGTGAAACAGGGTCAGAAGGTGGAGAAAGGTCAGCCCCTCTGCGTGCTCAGCGCCATGAAGATGGAGACTGTGGTGAACTCGCCAGTCACAGGAACCGTGGCCAAGGTGTACGTCAAGGCTGATAGCACGCTGGAAGGAGACGATTTGATCCTGGAGATCACAGAGTAAATTTTAAAGGTCAGGGACAGGGCAGAGGTTAAACAACACAAGCCCACTAGCACTGGTGATGCTTGACTCTTTATTAACTTTCCTAATTggtattaaattttaaaaatacatttcaaacagCTTTAAATATTCAGTGCAAGTACCAGAGAGGTGTAATatccaaaatattaatattttattcagcaatacatttttattttgaaagtgaATTATCTACAAAATGTGACAACAGCGTAGGATTGCAGTTCTCTTTCTGTCATAAGTTTGAACTACACATCCTCACCTAGAACTTTATGGCATATTGAATCTAGCTATGTGACAGAGCTATATTTTCCACAGTGATGATTCTAGTATTAAAGTGATAAATGAATTTATTGCCTGTTAACGTGACTAATCATTGTAAATTCTGCAAATGTATGAAGTtttgtgcatgtatgtataaGATCTCTTATGGATCAAAGTACACCAATTTTGTCTTAATGTTACATGAGTGGagcattaaaacacatattatAATAGATgtaaaatatcaatattaaGCTCTCCAGAACATGCAGtacaaattaaagcaaaaatattaGATGGGTTGCCAAAATAATGTATCTTACATCATAGCTTATGATATAAATTCACCTGATTATGGGGCCATTTTATAAttgaattttataaataaagctaatgtttgtttcagtgtaaa

Function

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004075 biotin carboxylase activity molecular_function
GO:0004736 pyruvate carboxylase activity molecular_function

KEGG:

id description
K01958 PC, pyc; pyruvate carboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76369 lncRNA downstream 3198 14295494 ~ 14295699 (-) True G64461
TU76343 lncRNA downstream 45134 14250611 ~ 14253763 (-) True G64440
TU76336 lncRNA downstream 68069 14178574 ~ 14230828 (-) True G64434
TU76186 lncRNA downstream 257609 14040666 ~ 14041288 (-) True G64291
TU76201 lncRNA downstream 281947 14016595 ~ 14016950 (-) True G64305
XR_004578094.1 lncRNA upstream 118207 14622036 ~ 14632753 (-) True LOC117597192
TU76798 lncRNA upstream 358095 14861924 ~ 14862199 (-) True G64860
TU76869 lncRNA upstream 463378 14967207 ~ 14968539 (-) True G64929
TU76907 lncRNA upstream 697469 15201298 ~ 15201545 (-) True G64964
TU77240 lncRNA upstream 1402265 15906094 ~ 15960367 (-) True G65253
XM_034303617.1 mRNA downstream 78609 14157436 ~ 14220288 (-) False plcb3
XM_034303616.1 mRNA downstream 78611 14157436 ~ 14220286 (-) True plcb3
XM_026936270.2 mRNA downstream 78614 14157436 ~ 14220283 (-) False plcb3
XM_026936443.2 mRNA downstream 211916 14079705 ~ 14086981 (-) True cct7
XM_026936012.2 mRNA downstream 244862 14041951 ~ 14054035 (-) True LOC113539907
XM_026936677.2 mRNA upstream 145119 14648948 ~ 14674373 (-) True rell1
XM_026936676.2 mRNA upstream 145119 14648948 ~ 14674358 (-) False rell1
XM_026935900.2 mRNA upstream 172614 14676443 ~ 14680843 (-) True rwdd
XM_026936639.2 mRNA upstream 270169 14773998 ~ 14809361 (-) False lrch4
XM_026936638.2 mRNA upstream 270880 14774709 ~ 14809362 (-) False lrch4
TU76338 other downstream 55216 14232809 ~ 14243681 (-) True G64436
XR_004578131.1 other downstream 389540 13909167 ~ 13909357 (-) True LOC113540747
XR_003404068.1 other downstream 390897 13907837 ~ 13908000 (-) True LOC113540694
XR_003404087.1 other downstream 394876 13903831 ~ 13904021 (-) True LOC113540713
XR_003404098.1 other downstream 1094435 13204273 ~ 13204462 (-) True LOC113540725
trnae-cuc_13 other upstream 230827 14734656 ~ 14734727 (-) True trnae-cuc_13
trnap-ugg_2 other upstream 1371998 15875827 ~ 15875898 (-) True trnap-ugg_2
XR_004578098.1 other upstream 1375642 15879471 ~ 15904355 (-) False tbc1d19
XR_004577994.1 other upstream 1469750 15973579 ~ 15991885 (-) False smim20
XR_003404041.2 other upstream 1551193 16055022 ~ 16071692 (-) False acox3

Expression Profile