RNA id: XM_026936443.2


Basic Information

Item Value
RNA id XM_026936443.2
length 2191
RNA type mRNA
GC content 0.51
exon number 11
gene id cct7
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14079705 ~ 14086981 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGCGGTATACACTTCGCCATAATTCgtagaagaagaaggagaagaagaagaagctgttCTAGAGAGTTCCAAGTGCATTGTGGGAACGTCACCCGGCACCGGTCTTCCTCTCTAGCCTGCAAAAATGATGCCCACACCGGTAATCCTTCTGAAGGAGGGGACAGACACGTCCCAGGGTGTCCCTCAGCTTGTCAGCAACATCAATGCCTGCCAGGTGATTGCCGAGGCCGTGCGCACCACGCTGGGTCCCCGCGGCATGGACAAGCTTATCGTGGACAACAGAGGTAAGGCCACCATCTCTAATGATGGAGCTACCATCCTGAAGCTGCTGGATGTGGTTCACCCTGCAGCCAAAACCCTGGTGGACATTGCCAGGTCTCAGGATGCTGAGGTCGGCGATGGCACCACCTCTGTAACGCTGCTTGCAGCAGAGTTTCTGAAGCAGCTGAAGCCATACGTAGAAGAGGGGCTCCACCCACAGACCATCATCCGAGCTTTCCGCACTGCCACACAGCTCGCAGTCAAAAAGATTAAAGAGATCGCAGTCACTGTCAAAAAGGACGACAAGCAggAGCAGAGGCGTTTGTTGGAGAAGTGTGCTGCTACAGCGCTGAACTCAAAGCTGATTGCTGGCCAGAAGGACTTCTTCTCCAAGATGGTGGTGGATGCAGTGATGATGCTGGATGAGCTGCTGCCACTCAAGATGATTGGCATGAAGAAAGTTCAGGGTGGAGCTTTGGAGgacTCTCATCTGGTGGCTGGTGTGGCCTTTAAAAAGACCTTCTCCTATGCTGGCTTTGAGATGCAGCCTAAACGTTACGAGAACCCTAAGATCGCCCTCCTCAACATCGAGCTGGAGCTGAAGGCAGAGAAGGACAACGCTGAAGTCCGCGTCAACAACGTTGAGGACTATCAAGCCATCGTGGATGCCGAATGGAACATTCTATATGATAAGCTGGAGAAGATCTACAAGTCTGGAGCCAAAGTGGTGCTGTCCAAACTGCCCATCGGGGATGTTGCTACACAGTACTTTGCTGATAGAGATCTGTTCTGCGCTGGCCGCGTCCAGGAGGAGGATCTGAAGAGAACCATGATGGCCTGCGGTGGCTCTATCCAGACAAGTGTTGGCTCCCTCACTGATGATGTACTGGGCTGCTGTGAGCTCTTTGAGGAGGTGCAGGTTGGAGGAGAGAGGTATAACTTCTTCAAAGGCTGTCCCAAGGCCAAGACATGCACCATCATCCTGAGGGGTGGAGCTGAGCAGTTTATGGAGGAGACCGAGCGATCACTGCATGATGCCATTATGATCGTACGCAGAGCCATCAAGAATGACTCAGTTGTGGCTGGAGGTGGTGCTATAGAGATGGAGTTGTCCAAATATTTGAGGGACTATTCCAGGACCATCCCAGGCAAGCAGCAGCTGCTGATAGGAGCCTACGCAAAAGCACTGGAGATCATTCCCAGACAGCTGTGTGACAACGCTGGCTTTGATGCAACTAATATTCTCAACAAGCTCCGAGCCAGACACGCACAGGGTGGAATGTGGTACGGCGTGGACGTGAACAATGAGGACATCGCTGATAATTTCCAGGCGTGTGTGTGGGAGCCAGCCGTTGTGCGCATCAACGCTCTGACCGCTGCCTCTGAGGCTGCCTGCCTCATCCTCTCTGTGGATGAGACCATCAAAAACCCCCGCTCTAGTGTCGACGGCCCTCCAGTACCTGGTGGTAGAGGCAGGGGTCGTGGTAGGCCCCATGCCCACTAGAAtgccccatacacacacatgcaccaacCCTGAGCACAGCAGCTCTATATGTGTAGCCTCTGGACTGTTAGATCAAAAGGATGCAGTTTTGGTCCCATTTTACTTACTAACCTGTTAGTTAATGCCTACAATGTTATTAGCTGTTTCGTGTGGTGGCTGCCAGCTATGGAATGCAAAAGAAAGCGCAGATTGCTAAATGCATCACTAATGCTTATTGTCTGGTTTTGTAAGTAAAGTGGGATTTTGGCTGTTTATTAGTGGCTGCTTGTTTTGTAATAGTTTGATCACACACACGAGGActttctggtttgtgaaattgTAGAAGCACTGATACTGGGCGTTGAGCCAGACTGCAGGATGTTCCCATGTTGTCATTCGGTCGAACTATTTATTGGACCATTAAAATCCGTACTTTGACATTTCA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09499 CCT7; T-complex protein 1 subunit eta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76186 lncRNA downstream 38417 14040666 ~ 14041288 (-) True G64291
TU76201 lncRNA downstream 62755 14016595 ~ 14016950 (-) True G64305
TU76191 lncRNA downstream 80022 13998735 ~ 13999683 (-) True G64296
TU76189 lncRNA downstream 83306 13992571 ~ 13996399 (-) True G64294
TU76141 lncRNA downstream 167885 13902924 ~ 13911820 (-) False G64252
TU76336 lncRNA upstream 91593 14178574 ~ 14230828 (-) True G64434
TU76343 lncRNA upstream 163630 14250611 ~ 14253763 (-) True G64440
TU76369 lncRNA upstream 208513 14295494 ~ 14295699 (-) True G64461
XR_004578094.1 lncRNA upstream 535055 14622036 ~ 14632753 (-) True LOC117597192
TU76798 lncRNA upstream 774943 14861924 ~ 14862199 (-) True G64860
XM_026936012.2 mRNA downstream 25670 14041951 ~ 14054035 (-) True LOC113539907
XM_026936736.2 mRNA downstream 46665 14018458 ~ 14033040 (-) True dok1b
XM_026936919.2 mRNA downstream 111794 13912683 ~ 13967911 (-) True sema4f
XM_026936327.2 mRNA downstream 282260 13747239 ~ 13797445 (-) False col4a5
XM_034303617.1 mRNA upstream 70455 14157436 ~ 14220288 (-) False plcb3
XM_034303616.1 mRNA upstream 70455 14157436 ~ 14220286 (-) True plcb3
XM_026936270.2 mRNA upstream 70455 14157436 ~ 14220283 (-) False plcb3
XM_026936435.2 mRNA upstream 211916 14298897 ~ 14503829 (-) True pcxb
XM_026936677.2 mRNA upstream 561967 14648948 ~ 14674373 (-) True rell1
XR_004578131.1 other downstream 170348 13909167 ~ 13909357 (-) True LOC113540747
XR_003404068.1 other downstream 171705 13907837 ~ 13908000 (-) True LOC113540694
XR_003404087.1 other downstream 175684 13903831 ~ 13904021 (-) True LOC113540713
XR_003404098.1 other downstream 875243 13204273 ~ 13204462 (-) True LOC113540725
TU74901 other downstream 1802036 12272372 ~ 12277669 (-) False LOC113539775
TU76338 other upstream 145828 14232809 ~ 14243681 (-) True G64436
trnae-cuc_13 other upstream 647675 14734656 ~ 14734727 (-) True trnae-cuc_13
trnap-ugg_2 other upstream 1788846 15875827 ~ 15875898 (-) True trnap-ugg_2
XR_004578098.1 other upstream 1792490 15879471 ~ 15904355 (-) False tbc1d19
XR_004577994.1 other upstream 1886598 15973579 ~ 15991885 (-) False smim20

Expression Profile